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id: placeholder
host:
host_id: XX1
host_species: http://purl.obolibrary.org/obo/NCBITaxon_9606
host_sex: http://purl.obolibrary.org/obo/NCIT_C27993
host_age: 20
host_age_unit: http://purl.obolibrary.org/obo/UO_0000036
host_health_status: A condition or state at a particular time (Disease ontology)
host_treatment: Process in which the act is intended to modify or alter host status (Compounds)
host_vaccination: List of vaccines given to the host (RRIDs?)
additional_host_information: Field for additional host information
sample:
sample_id: Id of the sample as defined by the submitter
collector_name: Name of the person that took the sample
collecting_institution: Institute that was responsible of sampling
specimen_source: http://purl.obolibrary.org/obo/NCIT_C155831
specimen_source2: http://purl.obolibrary.org/obo/NCIT_C155835
collection_date: "2020-01-01"
collection_location: http://www.wikidata.org/entity/Q148
sample_storage_conditions: XXX
additional_collection_information: XXX
virus:
virus_species: http://purl.obolibrary.org/obo/NCBITaxon_2697049
virus_strain: SARS-CoV-2/human/CHN/HS_8/2020
technology:
sample_sequencing_technology: http://www.ebi.ac.uk/efo/EFO_0009173
sample_sequencing_technology2: http://www.ebi.ac.uk/efo/EFO_0009173
sequence_assembly_method: Protocol used for assembly (CWL, WDL, NF, BCO?)
sequencing_coverage: 70
submitter:
submitter_name: John Doe (ORCID?)
submitter_address: John Doe's adress
originating_lab: John Doe kitchen
lab_address: John Doe's address
provider_sample_id: HmX
submitter_sample_id: xXx
authors: John Doe et all
submitter_orcid: https://orcid.org/0000-0000-0000-0000 (if this is here, others can be optional?)
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