aboutsummaryrefslogtreecommitdiff
path: root/example/maximum_metadata_example.yaml
blob: 9c349ce10c9fdcdf28db6fd6a57f7a97b8f55b46 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
id: placeholder

license:
    license_type: https://creativecommons.org/licenses/by/4.0/
    title: "Sample"
    attribution_name: "John doe, Joe Boe, Jonny Oe"
    attribution_url: http://covid19.genenetwork.org/id

host:
    host_id: XX1
    host_species: http://purl.obolibrary.org/obo/NCBITaxon_9606
    host_sex: http://purl.obolibrary.org/obo/PATO_0000384
    host_age: 20
    host_age_unit: http://purl.obolibrary.org/obo/UO_0000036
    host_health_status: http://purl.obolibrary.org/obo/NCIT_C25269
    host_treatment: Process in which the act is intended to modify or alter host status (Compounds)
    host_vaccination: [vaccines1,vaccine2]
    ethnicity: http://purl.obolibrary.org/obo/HANCESTRO_0010
    additional_host_information: Optional free text field for additional information

sample:
    sample_id: Id of the sample as defined by the submitter
    collector_name: Name of the person that took the sample
    collecting_institution: Institute that was responsible of sampling
    specimen_source: [http://purl.obolibrary.org/obo/NCIT_C155831,http://purl.obolibrary.org/obo/NCIT_C155835]
    collection_date: "2020-01-01"
    collection_location: http://www.wikidata.org/entity/Q148
    sample_storage_conditions: frozen specimen
    source_database_accession: [http://identifiers.org/insdc/LC522350.1#sequence]
    additional_collection_information: Optional free text field for additional information

virus:
    virus_species: http://purl.obolibrary.org/obo/NCBITaxon_2697049
    virus_strain: SARS-CoV-2/human/CHN/HS_8/2020

technology:
    assembly_method: "http://purl.obolibrary.org/obo/GENEPIO_0001628"
    sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0009173,http://www.ebi.ac.uk/efo/EFO_0009173]
    alignment_protocol: Protocol used for assembly
    sequencing_coverage: [70.0, 100.0]
    additional_technology_information: Optional free text field for additional information

submitter:
    authors: [John Doe, Joe Boe, Jonny Oe]
    submitter_name: [John Doe]
    submitter_address: John Doe's address
    originating_lab: John Doe kitchen
    lab_address: John Doe's address
    provider: XXX1
    submitter_sample_id: XXX2
    publication: PMID00001113
    submitter_orcid: [https://orcid.org/0000-0000-0000-0000,https://orcid.org/0000-0000-0000-0001]
    additional_submitter_information: Optional free text field for additional information