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id: placeholder
license:
license_type: https://creativecommons.org/licenses/by/4.0/
title: "SARS-CoV-2 New Zealand"
attribution_name: "ESR"
attribution_url: https://www.esr.cri.nz/
host:
host_species: http://purl.obolibrary.org/obo/NCBITaxon_9606
additional_host_information: Optional free text field for additional information
sample:
sample_id: "20VR0174"
collection_date: "2020-02-26"
collection_location: https://www.wikidata.org/wiki/Q37100
specimen_source: [http://purl.obolibrary.org/obo/NCIT_C155831]
source_database_accession: [http://identifiers.org/insdc/LC522350.1#sequence]
additional_collection_information: Optional free text field for additional information
virus:
virus_species: http://purl.obolibrary.org/obo/NCBITaxon_2697049
virus_strain: SARS-CoV-2/human/CHN/HS_8/2020
technology:
sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0008632] # Nanopore MinION
alignment_protocol: https://github.com/ESR-NZ/NZ_SARS-CoV-2_genomics
assembly_method: "http://purl.obolibrary.org/obo/GENEPIO_0001628"
additional_technology_information: "Artic V3 workflow"
submitter:
authors: [Jemma L Geoghegan, Xiaoyun Ren, Matthew Storey, James Hadfield, Lauren Jelley, Sarah Jefferies, Jill Sherwood, Shevaun Paine, Sue Huang, Jordan Douglas, Fabio K Mendes, Andrew Sporle, Michael G Baker, David R Murdoch, Nigel French, Colin R Simpson, David Welch, Alexei J Drummond, Edward C Holmes, Sebastian Duchene, Joep de Ligt]
submitter_name: [Joep de Ligt]
submitter_address: "PO Box 50348, Porirua 5240, New Zealand"
originating_lab: ESR
submitter_sample_id: "PRJNA648792"
publication: https://doi.org/10.1101/2020.08.05.20168930
submitter_orcid: [https://orcid.org/0000-0003-0970-0153]
additional_submitter_information: Optional free text field for additional information
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