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<!DOCTYPE html>
<html>
  {% include 'header.html' %}
  {% include 'mapheader.html' %}
    <body>
      {% include 'banner.html' %}
      {% include 'menu.html' %}

      <section>
                <div class="intro">
                    <p>
                        Make your sequence
                        data <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR</a>. Upload
                        your SARS-CoV-2 sequence (FASTA or FASTQ
                        formats) with metadata (JSONLD) to
                        the <a href="/about">public sequence
                        resource</a>. The upload will trigger a
                        recompute with all available sequences into a
                        Pangenome available for
                        <a href="/download">download</a>!
                    </p>
                    <p>
                        Your uploaded sequence will automatically be
                        processed and incorporated into the public
                        pangenome with metadata using worklows from
                        the High Performance Open Biology Lab
                        defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. All
                        data is published under
                        a <a href="https://creativecommons.org/licenses/by/4.0/">Creative
                        Commons license</a> You can take the published
                        (GFA/RDF/FASTA) data and store it in a triple
                        store for further processing.  Clinical
                        data can be stored
                        securely
                        at <a href="https://redcap-covid19.elixir-luxembourg.org/redcap/">REDCap</a>.
                    </p>
                    <p>
                      Note that form fields contain
                      web <a href="https://en.wikipedia.org/wiki/Web_Ontology_Language">ontology
                      URI's</a>
                      for <a href="https://en.wikipedia.org/wiki/Wikipedia:Disambiguation">disambiguation</a>
                      and machine readable metadata. For examples of
                      use, see the <a href="/blog">BLOG</a>.
                    </p>
                </div>
        </section>

      <section id="map_view" class="invisible">
        <div id="mapid"></div>
      </section>

      {% include 'footer.html' %}


      <script type="text/javascript">
        let scriptRoot = {{ request.script_root|tojson|safe }}; // examples

        drawMap()

      </script>

   </body>
</html>