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path: root/bh20simplewebuploader/templates/ebi-sample.xml
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<?xml version="1.0" encoding="UTF-8"?>
<SAMPLE_SET>
  <SAMPLE alias="{{ sampleid }}" center_name="COVID-19 PubSeq">
    <TITLE>COVID-19 PubSeq Sample</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>2697049</TAXON_ID>
      <SCIENTIFIC_NAME>Severe acute respiratory syndrome coronavirus 2</SCIENTIFIC_NAME>
      <COMMON_NAME>SARS-CoV-2</COMMON_NAME>
    </SAMPLE_NAME>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>investigation type</TAG>
        <VALUE>{{ investigation_type }}</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sequencing method</TAG>
        <VALUE>{{ sequencer }}</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection date</TAG>
        <VALUE>{{ date }}</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (latitude)</TAG>
        <VALUE>{{ latidude }}</VALUE>
     <UNITS>DD</UNITS>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (longitude)</TAG>
        <VALUE>{{ longitude }}</VALUE>
     <UNITS>DD</UNITS>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
     <TAG>geographic location (country and/or sea)</TAG>
     <VALUE>{{ country }}</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (region and locality)</TAG>
        <VALUE>{{ locality }}</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (material)</TAG>
        <VALUE>{{ specimen }}</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>ENA-CHECKLIST</TAG>
        <VALUE>ERC000011</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
</SAMPLE_SET>