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<!DOCTYPE html>
<html>
{% include 'header.html' %}
<body>
{% include 'banner.html' %}
{% include 'menu.html' %}
<p>The Virtuoso database contains <span id="CounterDB"></span> public sequences! The examples here should provide a starting point to explore our data in our public <a href="http://sparql.genenetwork.org/sparql">SPARQL endpoint</a> or via <a href="https://covid-19-sparql.expasy.org/">SIB COVID-19 Integrated Knowledgebase</a>. See also our documentation <a href="http://covid-19.genenetwork.org/blog?id=using-covid-19-pubseq-part1">here</a> for more information!</p>
<!--
<div class="search">
<input id="search-input" type="search" placeholder="FASTA uri" required>
<button class="button search-button" type="submit" onclick="search()">
<span class="icon ion-search">
<span class="sr-only">Search</span>
</span>
</button>
<span class="dropt" title="http://collections.lugli.arvadosapi.com/c=00fede2c6f52b053a14edca01cfa02b7+126/sequence.fasta">(example)<span style="width:500px;"></span></span>
</div>
-->
<section class="search-section">
<div id="playgroundButtonBox" class="filter-options" action="#">
<div>
<button class="button" onclick="demoFetchSEQCountByLocation()">Count by location</button>
<button class="button" onclick="demoGetSEQCountbytech()">Count by sequencer</button>
<button class="button" onclick="demoGetSeqIllumina()">Sequences done with Illumina iSeq 100</button>
<button class="button" onclick="demoFetchInstitutesPublications()">Get list of publications</button>
<button class="button" onclick="demoGetSeqWithStrain()">Sequences and their virus_strain</button>
<button class="button" onclick="demoFetchSEQCountBySpecimen()">Count by Specimen source</button>
<button class="button" onclick="demoGetSEQCountbytechContinent()">Sequence Technologies used by continent</button>
<button class="button" onclick="demoGetAuthors()">Get authors</button>
<button class="button" onclick="demoGetLocationGps()">Locations and their GPS</button>
<button class="button" onclick="demoGetSequencePerDate()">Show sequences by collection date</button>
<button class="button" onclick="demoGetSouthAmericaSeq()">List sequences from South America</button>
<button class="button" onclick="demoGetSeqByAgeGender()">Get Sequence by age and gender</button>
<button class="button" onclick="demoGetNYsamples()">Get all NY samples</button>
<button class="button" onclick="demoGetContinentSpecimentSeqCount()">Sequence count by continent/specimen_source</button>
<button class="button" onclick="demoGetSampleSchema()">Show sample meta data schema</button>
<!-- <button class="button" onclick="fetchAllaccessions()">Show All accessions</button>
<button class="button" onclick="fetchSEQCountbyContinent()">Count by Continent</button>-->
</div>
</div>
</section>
<div id="loader" class="loader invisible">
</div>
<section>
<div id="playground"></div>
</section>
{% include 'footer.html' %}
<script type="text/javascript">
let scriptRoot = {{ request.script_root|tojson|safe }}; // examples
document.addEventListener("DOMContentLoaded", function(){
var count = fetch("/api/getCountDB")
.then((resp) => resp.json())
.then(function (data) {
count = data["sequences"];
console.log(count);
span = document.getElementById("CounterDB");
txt = document.createTextNode(count);
span.appendChild(txt);
});
});
</script>
</body>
</html>
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