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<p>
  COVID-19 PubSeq is a free and open online bioinformatics public
  sequence resource with on-the-fly analysis of sequenced SARS-CoV-2
  samples that allows for a quick turnaround in identification of new
  virus strains. PubSeq allows anyone to upload sequence material in
  the form of FASTA or FASTQ files with accompanying metadata through
  a web interface or REST API.
</p>
<p>
  Our goal is to help map the viral variants in this pandemic. Early
  identification of variants helps with testing and treatments!
  COVID-19 PubSeq accepts sequence material from all sources (notably
  in FASTA format). In addition, PubSeq provides specific workflows
  for Oxford Nanopore analysis in FAST5 and FASTQ format. If you have
  an Oxford Nanopore and need (free) help analysing SARS-CoV-2 FAST5
  or FASTQ data, feel free to <a href="/contact">contact us</a>! Also
  for commercial support you can reach out.
</p>
<p>
  COVID-19 PubSeq is also a repository for sequences with a low
  barrier to entry for uploading sequence data using best practices,
  including <a href="https://en.wikipedia.org/wiki/FAIR_data">FAIR
  data</a>. Data are published with metadata using state-of-the art
  standards and, perhaps most importantly, providing standardised
  workflows that get triggered on upload, so that results are
  immediately available in standardised data formats. Note that, in
  general, there is no conflict also uploading your data to other
  repositories, including EBI/ENA and GISAID.
</p>
<p>
  Your uploaded sequence will automatically be processed and
  incorporated into the public pangenome with metadata using worklows
  from the High Performance Open Biology Lab
  defined <a href="https://github.com/hpobio-lab/viral-analysis/tree/master/cwl/pangenome-generate">here</a>. Importantly, all
  data is published under
  a <a href="https://creativecommons.org/">Creative
  Commons license</a> (CC0 or CC-BY-4.0). Anyone can take the
  published (GFA/RDF/FASTA) data and use it for
  further processing.
</p>