blob: 8f8ab66eb5edac930f2be0cf15ac71dc35b78e7f (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
|
<!DOCTYPE html>
<html>
{% include 'header.html' %}
<body>
{% include 'banner.html' %}
{% include 'menu.html' %}
{% if embed %}
{{ embed|safe }}
<hr>
<p>
Other blog entries:
</p>
{% else %}
{% include 'blurb.html' %}
<h2>BLOG Entries:</h2>
{% endif %}
<section class="blog-entries">
<div class="blog-table">
<div class="blog-table-body">
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part1">Query metadata with SPARQL</a>
</div>
<div class="blog-table-cell">
We fetch sequence data and metadata. We query
the metadata in multiple ways using SPARQL and onthologies
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part3">Submitting a sequence</a>
</div>
<div class="blog-table-cell">
We submit a sequence to the database. In this BLOG we fetch
a sequence from GenBank and add it to the database.
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part4">Modify workflow</a>
</div>
<div class="blog-table-cell">
We modify a workflow to get new output
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part5">Modify metadata</a>
</div>
<div class="blog-table-cell">
We modify metadata for all to use! In this BLOG we add a field
for a creative commons license.
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part2">Interacting with Arvados</a>
</div>
<div class="blog-table-cell">
We explore the Arvados command line and API
</div>
</div>
</div>
</div>
</section>
{% include 'footer.html' %}
<script type="text/javascript">
let scriptRoot = {{ request.script_root|tojson|safe }}; // examples
document.addEventListener("DOMContentLoaded", function(){
var count = fetch("/api/getCount")
.then((resp) => resp.json())
.then(function (data) {
count = data["sequences"];
console.log(count);
span = document.getElementById("Counter");
txt = document.createTextNode(count);
span.appendChild(txt);
});
});
</script>
</body>
</html>
|