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<!DOCTYPE html>
<html>
{% include 'header.html' %}
<body>
{% include 'banner.html' %}
{% include 'menu.html' %}
<h1>BLOG Entries</h1>
<i>Note that this is work in progress (WIP)</i>
<section class="blog-entries">
<div class="blog-table">
<div class="blog-table-body">
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part1.org">Query metadata with SPARQL</a>
</div>
<div class="blog-table-cell">
We fetch sequence data and metadata. We query
the metadata in multiple ways using SPARQL and onthologies
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part2.org">Interacting with Arvados</a>
</div>
<div class="blog-table-cell">
We explore the Arvados command line and API
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part3.org">Submitting a sequence</a>
</div>
<div class="blog-table-cell">
We submit a sequence to the database
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part4.org">Update workflow</a>
</div>
<div class="blog-table-cell">
We modify a workflow to get new output
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part5.org">Update metadata</a>
</div>
<div class="blog-table-cell">
We modify metadata for all to use!
</div>
</div>
</div>
</div>
</section>
{% include 'footer.html' %}
<script type="text/javascript">
let scriptRoot = {{ request.script_root|tojson|safe }}; // examples
document.addEventListener("DOMContentLoaded", function(){
var count = fetch("/api/getCount")
.then((resp) => resp.json())
.then(function (data) {
count = data["sequences"];
console.log(count);
span = document.getElementById("Counter");
txt = document.createTextNode(count);
span.appendChild(txt);
});
});
</script>
</body>
</html>
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