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<!DOCTYPE html>
<html>
  {% include 'header.html' %}
  <body>
    {% include 'banner.html' %}
    {% include 'menu.html' %}

    <h1>BLOG Entries</h1>

    <i>Note that this is work in progress (WIP)</i>

    <section class="blog-entries">
      <div class="blog-table">
        <div class="blog-table-body">
          <div class="blog-table-row">
            <div class="blog-table-cell">
              <a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part1.org">Query metadata with SPARQL</a>
            </div>
            <div class="blog-table-cell">
              We fetch sequence data and metadata. We query
              the metadata in multiple ways using SPARQL and onthologies
            </div>
          </div>
          <div class="blog-table-row">
            <div class="blog-table-cell">
              <a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part2.org">Interacting with Arvados</a>
            </div>
            <div class="blog-table-cell">
              We explore the Arvados command line and API
            </div>
          </div>
          <div class="blog-table-row">
            <div class="blog-table-cell">
              <a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part3.org">Submitting a sequence</a>
            </div>
            <div class="blog-table-cell">
              We submit a sequence to the database
            </div>
          </div>
          <div class="blog-table-row">
            <div class="blog-table-cell">
              <a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part4.org">Update workflow</a>
            </div>
            <div class="blog-table-cell">
              We modify a workflow to get new output
            </div>
          </div>
          <div class="blog-table-row">
            <div class="blog-table-cell">
              <a href="https://github.com/arvados/bh20-seq-resource/blob/master/doc/blog/using-covid-19-pubseq-part5.org">Update metadata</a>
            </div>
            <div class="blog-table-cell">
              We modify metadata for all to use!
            </div>
          </div>
        </div>
      </div>
    </section>

    {% include 'footer.html' %}

    <script type="text/javascript">
      let scriptRoot = {{ request.script_root|tojson|safe }}; // examples

      document.addEventListener("DOMContentLoaded", function(){
          var count = fetch("/api/getCount")
              .then((resp) => resp.json())
              .then(function (data) {
                  count = data["sequences"];
                  console.log(count);
                  span = document.getElementById("Counter");
                  txt = document.createTextNode(count);
                  span.appendChild(txt);
              });
      });

    </script>
  </body>

</html>