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<!DOCTYPE html>
<html>
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<body>
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{% include 'menu.html' %}
{% if embed %}
{{ embed|safe }}
<hr>
<h1>Other documents</h1>
{% else %}
<h2>Documents:</h2>
{% endif %}
<section class="blog-entries">
<div class="blog-table">
<div class="blog-table-body">
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part1">Query metadata with SPARQL</a>
</div>
<div class="blog-table-cell">
We fetch sequence data and metadata. We query
the metadata in multiple ways using SPARQL and onthologies
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part3">Submitting a sequence</a>
</div>
<div class="blog-table-cell">
We submit a sequence to the database. In this BLOG we fetch
a sequence from GenBank and add it to the database.
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part4">Modify workflow</a>
</div>
<div class="blog-table-cell">
We modify a workflow to get new output
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part5">Modify metadata</a>
</div>
<div class="blog-table-cell">
We modify metadata for all to use! In this BLOG we add a field
for a creative commons license.
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part2">Interacting with Arvados</a>
</div>
<div class="blog-table-cell">
We explore the Arvados command line and API
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/blog?id=using-covid-19-pubseq-part6">Prepare for uploading to EBI/ENA</a>
</div>
<div class="blog-table-cell">
Generate the files needed for uploading to EBI/ENA
</div>
</div>
<div class="blog-table-row">
<div class="blog-table-cell">
<a href="/apidoc">REST API</a>
</div>
<div class="blog-table-cell">
Documentation for PubSeq REST API
</div>
</div>
</div>
</div>
</section>
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