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$base: http://biohackathon.org/bh20-seq-schema
$namespaces:
sch: https://schema.org/
efo: http://www.ebi.ac.uk/efo/
obo: http://purl.obolibrary.org/obo/
sio: http://semanticscience.org/resource/
edam: http://edamontology.org/
evs: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#
$graph:
- name: hostSchema
type: record
fields:
host_species:
type: string
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000532
host_id:
type: string
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_000115
host_common_name:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/NOMEN_0000037
host_sex:
type: string
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/PATO_0000047
host_age:
type: int?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/PATO_0000011
host_age_unit:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/UO_0000036
host_health_status:
type: string?
jsonldPredicate: http://purl.obolibrary.org/obo/NCIT_C25688
host_treatment:
type: string?
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000727
host_vaccination:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/VO_0000001
additional_host_information:
type: string?
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_001167
- name: sampleSchema
type: record
fields:
collector_name:
type: string
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001895
collecting_institution:
type: string
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_001167
specimen_source:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001479
collection_date:
type: string?
jsonldPredicate:
_id: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25164
collection_location:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/GAZ_00000448
sample_storage_conditions:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0001472
additional_collection_information:
type: string?
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_001167
sample_id:
type: string
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_000115
source_database_accession:
type: string?
jsonldPredicate:
_id: http://edamontology.org/data_2091
- name: virusSchema
type: record
fields:
virus_species:
type: string?
jsonldPredicate:
_id: http://edamontology.org/data_1875
virus_strain:
type: string?
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_010055
- name: technologySchema
type: record
fields:
sample_sequencing_technology:
type: string
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0600047
sequence_assembly_method:
type: string?
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0002699
sequencing_coverage:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/FLU_0000848
- name: submitterSchema
type: record
fields:
submitter_name:
type: string
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_000116
submitter_date:
type: string
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/NCIT_C94162
submitter_address:
type: string?
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_000172
originating_lab:
type: string
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/NCIT_C37984
lab_address:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/OBI_0600047
provider_sample_id:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/NCIT_C37900
submitter_sample_id:
type: string?
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0001741
authors:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/NCIT_C42781
submitter_id:
type: string?
jsonldPredicate:
_id: http://semanticscience.org/resource/SIO_000115
- name: MainSchema
type: record
documentRoot: true
fields:
host: hostSchema
sample: sampleSchema
virus: virusSchema?
technology: technologySchema
submitter: submitterSchema
submission:
type: string
jsonldPredicate:
_id: "@id"
#_type: "@id"
sequencefile:
doc: The subject (eg the fasta/fastq file) that this metadata describes
type: string?
jsonldPredicate:
_id: "@id"
_type: "@id"
|
