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$base: http://biohackathon.org/bh20-seq-schema
$namespaces:
sch: https://schema.org/
efo: http://www.ebi.ac.uk/efo/
obo: http://purl.obolibrary.org/obo/
$graph:
- name: hostSchema
type: record
fields:
host_species:
type: string
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000532
host_id: string
host_common_name: string?
host_sex: string?
host_age: int?
host_age_unit: string?
host_health_status: string?
host_treatment:
type: string?
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000727
additional_host_information: string?
- name: sampleSchema
type: record
fields:
collector_name: string
collecting_institution: string
specimen_source: string?
collection_date: string?
collection_location:
type: string?
jsonldPredicate:
_id: https://schema.org/fromLocation
sample_storage_conditions: string?
additional_collection_information: string?
- name: virusSchema
type: record
fields:
virus_species: string?
virus_strain: string?
- name: technologySchema
type: record
fields:
sample_sequencing_technology:
type: string
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000532
sequence_assembly_method:
type: string?
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0002699
sequencing_coverage:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/FLU_0000848
- name: submitterSchema
type: record
fields:
submitter_name: string
submitter_address: string?
originating_lab: string
lab_address: string?
provider_sample_id: string?
submitter_sample_id: string?
authors: string?
submitter_id: string?
- name: MainSchema
type: record
documentRoot: true
fields:
host: hostSchema
sample: sampleSchema
virus: virusSchema?
technology: technologySchema
submitter: submitterSchema
sequencefile:
doc: The subject (eg the fasta/fastq file) that this metadata describes
type: string?
jsonldPredicate:
_id: "@id"
_type: "@id"
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