index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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2021-01-28
Restored tools submodule
Pjotr Prins
2021-01-28
Moving tools out of submodules (sorry!)
Pjotr Prins
2021-01-08
GenBank: Fix normalization and depth differences with original records
Pjotr Prins
2021-01-06
Pubseq fetch: sometimes a request times out. So repeat with intervals.
Pjotr Prins
2021-01-05
Fetching fixes
Pjotr Prins
2021-01-05
Add option for fetching fasta
Pjotr Prins
2021-01-05
fetch: do a straight dump of the original record
Pjotr Prins
2021-01-05
fetches original metadata from PubSeq/Arvados
Pjotr Prins
2021-01-05
API: fix returned record to include original metadata
Pjotr Prins
2021-01-05
Rename
Pjotr Prins
2021-01-04
mapping: no longer requires specimen file for genbank output
Pjotr Prins
2021-01-04
mapping sample_species using regex
Pjotr Prins
2021-01-04
Started on normalization
Pjotr Prins
2020-08-19
Scaling pangenome generation
Peter Amstutz
2020-06-11
tweaks for proper graph browser output
Michael R. Crusoe
2020-06-02
update tool sub repo
Michael R. Crusoe
2020-05-14
Workflow fixes
Peter Amstutz
2020-05-05
preserve the directory layout of segmentation.py
Michael R. Crusoe
2020-05-05
move some tools into the shared repo
Michael R. Crusoe
2020-05-04
add pangenome browser prep
Michael R. Crusoe