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:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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2020-06-18
removed double sorting
Andrea Guarracino
2020-05-26
Can have list of sequence labels to exclude from combined fasta
Peter Amstutz
2020-05-14
Workflow fixes
Peter Amstutz
2020-05-11
Merge pull request #49 from mr-c/add_pangenome_browser_prep
Peter Amstutz
2020-05-05
preserve the directory layout of segmentation.py
Michael R. Crusoe
2020-05-05
move some tools into the shared repo
Michael R. Crusoe
2020-05-04
bump jerven/spodgi image to 0.0.6
Peter Amstutz
2020-05-04
add pangenome browser prep
Michael R. Crusoe
2020-05-04
Increase RAM for minimap2
Peter Amstutz
2020-05-03
Set a RAM requirement on odgi_to_rdf to influence it to run on c5
Peter Amstutz
2020-05-01
Set verison tag on spodgi container image
Peter Amstutz
2020-04-28
Update spodgi docker image
Peter Amstutz
2020-04-21
Increase ram requirement for minimap2
Peter Amstutz
2020-04-21
Workaround CWL limit by chunking file list
Peter Amstutz
2020-04-21
Work around CWL content size limit by chunking
Peter Amstutz
2020-04-20
Add readsMergeDedup.fasta to output
Peter Amstutz
2020-04-20
Make sure there is a newline in relabeled fasta (but no blank lines)
Peter Amstutz
2020-04-20
Better handling of duplicate sequences
Peter Amstutz
2020-04-20
Relabel sequences to match metadata subjects.
Peter Amstutz
2020-04-20
Move workflows into main repo
Peter Amstutz