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path: root/workflows/pangenome-generate/relabel-seqs.py
AgeCommit message (Expand)Author
2020-05-26Can have list of sequence labels to exclude from combined fasta•••refs #68 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-04-21Workaround CWL limit by chunking file list•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-04-21Work around CWL content size limit by chunking•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-04-20Make sure there is a newline in relabeled fasta (but no blank lines)Peter Amstutz
2020-04-20Better handling of duplicate sequences•••Also save original fasta label in metadata Peter Amstutz
2020-04-20Relabel sequences to match metadata subjects.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz