index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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2020-05-31
Added new sequencing technologies
Andrea Guarracino
2020-05-31
Added new countries
Andrea Guarracino
2020-05-31
Added new species and specimen sources
Andrea Guarracino
2020-05-31
Updated the host_sex and host_age management
Andrea Guarracino
2020-05-31
The NCBI Virus entries are updated automatically
Andrea Guarracino
2020-05-20
Virtuoso update in CRON
Pjotr Prins
2020-05-13
Virtuoso uploader: always upload countries and labels
Pjotr Prins
2020-05-13
Virtuoso: split named graphs
Pjotr Prins
2020-05-12
Virtuoso uploader: does not delete graph yet
Pjotr Prins
2020-05-12
Update graph script
Pjotr Prins
2020-04-30
fixed UO_0000036 for year
Andrea Guarracino
2020-04-30
Merge pull request #41 from AndreaGuarracino/patch-14
LLTommy
2020-04-30
Import script fixes
Peter Amstutz
2020-04-30
Wrap import script to run as a workflow
Peter Amstutz
2020-04-29
the date is now handled more formally
Andrea Guarracino
2020-04-29
Reverting country list back, something went wrong there
lltommy
2020-04-28
updated to manage list fields and added new control on nasopharyngeal/throat ...
Andrea Guarracino
2020-04-28
Updated with new terms
Andrea Guarracino
2020-04-28
Updated with new terms
Andrea Guarracino
2020-04-28
Updated - 1731 IDs - 2020/04/28
Andrea Guarracino
2020-04-28
Changes to the structure - we use lists now instead of strings where it makes...
lltommy
2020-04-26
Updating dics
lltommy
2020-04-24
Add script that updates Virtuoso - run as a CRON job
Pjotr Prins
2020-04-23
Merge pull request #1 from AndreaGuarracino/patch-11
Andrea Guarracino
2020-04-23
code cleaning, refactoring, submitter name and address
Andrea Guarracino
2020-04-23
added nasal swab for several new IDs
Andrea Guarracino
2020-04-23
updated IDs list - 2020/04/23 - 1436 IDs
Andrea Guarracino
2020-04-23
Adding a third sequence technology option
lltommy
2020-04-23
Merge pull request #33 from AndreaGuarracino/patch-9
LLTommy
2020-04-22
code cleaning, checking and writing missing term on file
Andrea Guarracino
2020-04-22
created dict for host health status
Andrea Guarracino
2020-04-22
added some rows in the speciesman dict
Andrea Guarracino
2020-04-22
added some rows in the ncbi_countries dict
Andrea Guarracino
2020-04-22
updated IDs list - 2020/04/22
Andrea Guarracino
2020-04-22
Small changes all around, trying to make the importer/metadata better
lltommy
2020-04-21
Tweak handling of "coverage" also fix typo
Peter Amstutz
2020-04-21
Working on NCBI import
Peter Amstutz
2020-04-21
Updated shex and manditory fields and stuff
lltommy
2020-04-20
Merge pull request #29 from inutano/fix-mappings
LLTommy
2020-04-20
Merge pull request #28 from AndreaGuarracino/patch-8
LLTommy
2020-04-20
fix MinION to ONT
Tazro Inutano Ohta
2020-04-20
Fixing string -> URI in speciman, plus other things
lltommy
2020-04-19
added 'np/op' control for specimen_source
Andrea Guarracino
2020-04-19
Further updates to our NCBI dictonaries to translate this s*** to our model
lltommy
2020-04-19
fixed missing variable and managed comma in dicts
Andrea Guarracino
2020-04-19
Updating NCBI dictonaries, adding UI options, small yaml schema changes
lltommy
2020-04-19
Merge 984f74f7d7219c83d280b6eee46cba4aed4298bb
Pjotr Prins
2020-04-19
Merge branch 'master' into patch-6
Pjotr Prins
2020-04-19
Merge pull request #27 from AndreaGuarracino/patch-7
Pjotr Prins
2020-04-19
Merge pull request #23 from AndreaGuarracino/patch-3
Pjotr Prins
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