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AgeCommit message (Expand)Author
2020-07-03Add upload.cwlPeter Amstutz
2020-07-03Improving genbank import workflowPeter Amstutz
2020-06-22very little readme for the scriptsAndrea Guarracino
2020-06-22added new script to prepare metadata of sra dataAndreaGuarracino
2020-06-22moved the genbank script in his specific directoryAndreaGuarracino
2020-06-22added new dictionary entriesAndreaGuarracino
2020-06-22little fix for specimen_sourceAndrea Guarracino
2020-06-22new entries for the EBI samplesAndreaGuarracino
2020-06-22corrected the wrong entitiesAndrea Guarracino
2020-06-22Handle upload & assembly of gzipped, paired-end fastqPeter Amstutz
2020-06-15virtuoso: remove graph before updatePjotr Prins
2020-06-12species dictionaryAndrea Guarracino
2020-06-12species are managed in another dictionary, try-catch added to avoid unexpecte...Andrea Guarracino
2020-06-07the script is more verbose; added other countriesAndreaGuarracino
2020-06-06fixed collection_location when it is not present in the dictionary termsAndreaGuarracino
2020-06-06fixed collection-date management using a parserAndreaGuarracino
2020-06-06fixed collection-date management; updated assembly info management for new IDsAndreaGuarracino
2020-05-31Added new speciesman sourcesAndrea Guarracino
2020-05-31Added new sequencing technologiesAndrea Guarracino
2020-05-31Added new countriesAndrea Guarracino
2020-05-31Added new species and specimen sourcesAndrea Guarracino
2020-05-31Updated the host_sex and host_age managementAndrea Guarracino
2020-05-31The NCBI Virus entries are updated automaticallyAndrea Guarracino
2020-05-20Virtuoso update in CRONPjotr Prins
2020-05-13Virtuoso uploader: always upload countries and labelsPjotr Prins
2020-05-13Virtuoso: split named graphsPjotr Prins
2020-05-12Virtuoso uploader: does not delete graph yetPjotr Prins
2020-05-12Update graph scriptPjotr Prins
2020-04-30fixed UO_0000036 for yearAndrea Guarracino
2020-04-30Merge pull request #41 from AndreaGuarracino/patch-14LLTommy
2020-04-30Import script fixesPeter Amstutz
2020-04-30Wrap import script to run as a workflowPeter Amstutz
2020-04-29the date is now handled more formallyAndrea Guarracino
2020-04-29Reverting country list back, something went wrong therelltommy
2020-04-28updated to manage list fields and added new control on nasopharyngeal/throat ...Andrea Guarracino
2020-04-28Updated with new termsAndrea Guarracino
2020-04-28Updated with new termsAndrea Guarracino
2020-04-28Updated - 1731 IDs - 2020/04/28Andrea Guarracino
2020-04-28Changes to the structure - we use lists now instead of strings where it makes...lltommy
2020-04-26Updating dicslltommy
2020-04-24Add script that updates Virtuoso - run as a CRON jobPjotr Prins
2020-04-23Merge pull request #1 from AndreaGuarracino/patch-11Andrea Guarracino
2020-04-23code cleaning, refactoring, submitter name and addressAndrea Guarracino
2020-04-23added nasal swab for several new IDsAndrea Guarracino
2020-04-23updated IDs list - 2020/04/23 - 1436 IDsAndrea Guarracino
2020-04-23Adding a third sequence technology optionlltommy
2020-04-23Merge pull request #33 from AndreaGuarracino/patch-9LLTommy
2020-04-22code cleaning, checking and writing missing term on fileAndrea Guarracino
2020-04-22created dict for host health statusAndrea Guarracino
2020-04-22added some rows in the speciesman dictAndrea Guarracino
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