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bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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from_genbank_to_fasta_and_yaml.py
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Author
2020-05-31
Added new species and specimen sources
Andrea Guarracino
2020-05-31
Updated the host_sex and host_age management
Andrea Guarracino
2020-05-31
The NCBI Virus entries are updated automatically
Andrea Guarracino
2020-04-30
fixed UO_0000036 for year
Andrea Guarracino
2020-04-30
Merge pull request #41 from AndreaGuarracino/patch-14
LLTommy
2020-04-30
Wrap import script to run as a workflow
Peter Amstutz
2020-04-29
the date is now handled more formally
Andrea Guarracino
2020-04-28
updated to manage list fields and added new control on nasopharyngeal/throat ...
Andrea Guarracino
2020-04-28
Changes to the structure - we use lists now instead of strings where it makes...
lltommy
2020-04-23
code cleaning, refactoring, submitter name and address
Andrea Guarracino
2020-04-22
code cleaning, checking and writing missing term on file
Andrea Guarracino
2020-04-22
Small changes all around, trying to make the importer/metadata better
lltommy
2020-04-21
Tweak handling of "coverage" also fix typo
Peter Amstutz
2020-04-21
Working on NCBI import
Peter Amstutz
2020-04-21
Updated shex and manditory fields and stuff
lltommy
2020-04-19
added 'np/op' control for specimen_source
Andrea Guarracino
2020-04-19
fixed missing variable and managed comma in dicts
Andrea Guarracino
2020-04-18
new script release
Andrea Guarracino
2020-04-14
Rename script/from_genbank_to_fasta_and_yaml.py to scripts/from_genbank_to_fa...
Andrea Guarracino