aboutsummaryrefslogtreecommitdiff
path: root/scripts/download_genbank_data
AgeCommit message (Collapse)Author
2020-08-27updated dependency from clustalw to minimap2; the genbank script no longer ↵AndreaGuarracino
creates YAML/FASTA pairs for too short sequences
2020-08-26added option in the genbank script to ignore (already validated) IDs; code ↵AndreaGuarracino
cleaning; typos
2020-08-25the YAML/FASTA pair is not created for samples where at least one mandatory ↵AndreaGuarracino
field is missing
2020-08-23genbank/sra scripts update to be more generic with the specimen sourcesAndreaGuarracino
2020-08-22genbank/sra scripts updated to read the dictionaries in a more general wayAndreaGuarracino
2020-07-12added a suffix to distinguish which script created the error/warning filesAndreaGuarracino
2020-07-10an output file is created with the accessions for which no YAML file is createdAndreaGuarracino
2020-07-09fixed bug that lead to invalid sample_sequencing_technology valuesAndrea Guarracino
2020-07-07fix missing authors #91AndreaGuarracino
2020-07-07if the technology is not found, the YAML file is not created; managed longer ↵AndreaGuarracino
species strings
2020-07-06added seq technology in its additional information field if the term is ↵AndreaGuarracino
missing in the dicts
2020-07-03Improving genbank import workflowPeter Amstutz
2020-06-22moved the genbank script in his specific directoryAndreaGuarracino
generated by cgit v1.2.3 (git 2.45.2) at 2024-11-08 17:01:01 +0000