index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
path:
root
/
scripts
/
download_genbank_data
Age
Commit message (
Expand
)
Author
2020-08-26
added option in the genbank script to ignore (already validated) IDs; code cl...
AndreaGuarracino
2020-08-25
the YAML/FASTA pair is not created for samples where at least one mandatory f...
AndreaGuarracino
2020-08-23
genbank/sra scripts update to be more generic with the specimen sources
AndreaGuarracino
2020-08-22
genbank/sra scripts updated to read the dictionaries in a more general way
AndreaGuarracino
2020-07-12
added a suffix to distinguish which script created the error/warning files
AndreaGuarracino
2020-07-10
an output file is created with the accessions for which no YAML file is created
AndreaGuarracino
2020-07-09
fixed bug that lead to invalid sample_sequencing_technology values
Andrea Guarracino
2020-07-07
fix missing authors #91
AndreaGuarracino
2020-07-07
if the technology is not found, the YAML file is not created; managed longer ...
AndreaGuarracino
2020-07-06
added seq technology in its additional information field if the term is missi...
AndreaGuarracino
2020-07-03
Improving genbank import workflow
Peter Amstutz
2020-06-22
moved the genbank script in his specific directory
AndreaGuarracino