| Age | Commit message (Expand) | Author |
|---|
| 2020-11-13 | fix check date sra script | AndreaGuarracino |
| 2020-11-13 | generation of dates a little more robust | AndreaGuarracino |
| 2020-11-13 | to not create YAML files with date before 2019 December | AndreaGuarracino |
| 2020-11-13 | fix in the ids to consider | AndreaGuarracino |
| 2020-11-13 | added ids-to-consider option to the NCBI script | AndreaGuarracino |
| 2020-11-12 | managed the assembly_method in the scripts, doc, and the example templates | AndreaGuarracino |
| 2020-11-12 | updated alignment_protocol field in the script, doc, and the example templates | AndreaGuarracino |
| 2020-09-28 | new countries; updated genbank/sra scripts to manage more specimen sources | AndreaGuarracino |
| 2020-09-28 | genbank and sra scripts more picky on the ontologies; added utils.py for shar... | AndreaGuarracino |
| 2020-09-04 | added in the sra script an option to include only a subset of ids | AndreaGuarracino |
| 2020-09-04 | synchronized the create_sra_metadata.py script with the latest updates | AndreaGuarracino |
| 2020-08-28 | added control (locally and in the validation) that sample_id has to be the sa... | AndreaGuarracino |
| 2020-08-27 | updated dependency from clustalw to minimap2; the genbank script no longer cr... | AndreaGuarracino |
| 2020-08-26 | added option in the genbank script to ignore (already validated) IDs; code cl... | AndreaGuarracino |
| 2020-08-25 | the YAML/FASTA pair is not created for samples where at least one mandatory f... | AndreaGuarracino |
| 2020-08-23 | genbank/sra scripts update to be more generic with the specimen sources | AndreaGuarracino |
| 2020-08-22 | genbank/sra scripts updated to read the dictionaries in a more general way | AndreaGuarracino |
| 2020-07-12 | added a suffix to distinguish which script created the error/warning files | AndreaGuarracino |
| 2020-07-10 | an output file is created with the accessions for which no YAML file is created | AndreaGuarracino |
| 2020-07-09 | fixed bug that lead to invalid sample_sequencing_technology values | Andrea Guarracino |
| 2020-07-07 | fix missing authors #91 | AndreaGuarracino |
| 2020-07-07 | if the technology is not found, the YAML file is not created; managed longer ... | AndreaGuarracino |
| 2020-07-06 | added seq technology in its additional information field if the term is missi... | AndreaGuarracino |
| 2020-07-03 | Improving genbank import workflow | Peter Amstutz |
| 2020-06-22 | moved the genbank script in his specific directory | AndreaGuarracino |
