aboutsummaryrefslogtreecommitdiff
path: root/scripts/dict_ontology_standardization
AgeCommit message (Collapse)Author
2020-09-28new countries; updated genbank/sra scripts to manage more specimen sourcesAndreaGuarracino
2020-09-25added new New Zealand entriesAndreaGuarracino
2020-09-04sra script updated for managing more locationsAndreaGuarracino
2020-08-29fixed few countries ontology terms; added a new speciesAndreaGuarracino
2020-08-24fixed protocol for the dictionary entries that caused validation problemsAndreaGuarracino
2020-08-23added new countries and speciesman sources: fixed few country entriesAndreaGuarracino
2020-08-22lots of new dictionary termsAndreaGuarracino
2020-07-10other term for Homo sapiens (for SRA samples)Andrea Guarracino
2020-07-07if the technology is not found, the YAML file is not created; managed longer ↵AndreaGuarracino
species strings
2020-07-06fix ncbi_countries dictionaryAndreaGuarracino
2020-07-06new terms in the ncbi_countries dictionaryAndrea Guarracino
2020-07-06two more terms in the ncbi_sequencing_technology dictionaryAndrea Guarracino
2020-07-06new terms in the sequencing_technology dictionaryAndrea Guarracino
2020-06-22added new dictionary entriesAndreaGuarracino
2020-06-22new entries for the EBI samplesAndreaGuarracino
2020-06-22corrected the wrong entitiesAndrea Guarracino
http instead of https entity instead of wiki
2020-06-12species dictionaryAndrea Guarracino
2020-06-07the script is more verbose; added other countriesAndreaGuarracino
2020-05-31Added new speciesman sourcesAndrea Guarracino
2020-05-31Added new sequencing technologiesAndrea Guarracino
2020-05-31Added new countriesAndrea Guarracino
2020-04-29Reverting country list back, something went wrong therelltommy
2020-04-28Updated with new termsAndrea Guarracino
2020-04-28Updated with new termsAndrea Guarracino
2020-04-26Updating dicslltommy
2020-04-23added nasal swab for several new IDsAndrea Guarracino
2020-04-23Adding a third sequence technology optionlltommy
2020-04-22created dict for host health statusAndrea Guarracino
2020-04-22added some rows in the speciesman dictAndrea Guarracino
2020-04-22added some rows in the ncbi_countries dictAndrea Guarracino
2020-04-21Tweak handling of "coverage" also fix typoPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-20fix MinION to ONTTazro Inutano Ohta
2020-04-20Fixing string -> URI in speciman, plus other thingslltommy
2020-04-19Further updates to our NCBI dictonaries to translate this s*** to our modellltommy
2020-04-19Updating NCBI dictonaries, adding UI options, small yaml schema changeslltommy
2020-04-18dictionaries for mappingAndrea Guarracino
2020-04-18ncbi_speciesman_source mappingAndrea Guarracino
2020-04-18Delete dict_ontology_standardizationAndrea Guarracino
2020-04-18ncbi_speciesman_source mappingAndrea Guarracino
generated by cgit v1.2.3 (git 2.45.2) at 2024-11-26 01:29:49 +0000