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authorAndreaGuarracino2020-09-28 11:57:51 +0200
committerAndreaGuarracino2020-09-28 11:57:51 +0200
commitc72dab2788d010153d5406f2d5ecbe3824571931 (patch)
tree668ced54cfa0c27274f81cccc71397679bb63e26 /scripts/dict_ontology_standardization
parentbc2e51bc8418876cc826482ece10874b2a61fa03 (diff)
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new countries; updated genbank/sra scripts to manage more specimen sources
Diffstat (limited to 'scripts/dict_ontology_standardization')
-rw-r--r--scripts/dict_ontology_standardization/ncbi_countries.csv36
1 files changed, 36 insertions, 0 deletions
diff --git a/scripts/dict_ontology_standardization/ncbi_countries.csv b/scripts/dict_ontology_standardization/ncbi_countries.csv
index c466474..90d9af3 100644
--- a/scripts/dict_ontology_standardization/ncbi_countries.csv
+++ b/scripts/dict_ontology_standardization/ncbi_countries.csv
@@ -30,6 +30,7 @@ Australia:Victoria,http://www.wikidata.org/entity/Q36687
Australia:Northern Territory,http://www.wikidata.org/entity/Q3235
Australia:NSW,http://www.wikidata.org/entity/Q3224
Australia:South Australia,http://www.wikidata.org/entity/Q35715
+Australia:Tasmania,http://www.wikidata.org/entity/Q34366
Austria,http://www.wikidata.org/entity/Q40
Azerbaijan,http://www.wikidata.org/entity/Q227
Bahrain,http://www.wikidata.org/entity/Q398
@@ -88,6 +89,7 @@ China:HuaShang,http://www.wikidata.org/entity/Q148
China:Hubei,http://www.wikidata.org/entity/Q46862
"China:Hubei, Wuhan",http://www.wikidata.org/entity/Q11746
China:Hunan,http://www.wikidata.org/entity/Q45761
+"China:Hunan,Huaihua",http://www.wikidata.org/entity/Q416922
China:Inner Mongolia,http://www.wikidata.org/entity/Q41079
China:Jiangsu,http://www.wikidata.org/entity/Q16963
"China:Jiangsu, Changzhou",http://www.wikidata.org/entity/Q16963
@@ -126,6 +128,7 @@ Dominican Republic,http://www.wikidata.org/entity/Q786
East Timor,http://www.wikidata.org/entity/Q574
Ecuador,http://www.wikidata.org/entity/Q736
Egypt,http://www.wikidata.org/entity/Q79
+Egypt:Cairo,http://www.wikidata.org/entity/Q85
El Salvador,http://www.wikidata.org/entity/Q792
Equatorial Guinea,http://www.wikidata.org/entity/Q983
Eritrea,http://www.wikidata.org/entity/Q986
@@ -137,6 +140,7 @@ Federated States of Micronesia,http://www.wikidata.org/entity/Q702
Fiji,http://www.wikidata.org/entity/Q712
Finland,http://www.wikidata.org/entity/Q33
France,http://www.wikidata.org/entity/Q142
+France:Charente-Maritime,http://www.wikidata.org/entity/Q3278
Gabon,http://www.wikidata.org/entity/Q1000
Georgia,http://www.wikidata.org/entity/Q230
Germany,http://www.wikidata.org/entity/Q183
@@ -160,9 +164,17 @@ Hong Kong,http://www.wikidata.org/entity/Q8646
Iceland,http://www.wikidata.org/entity/Q189
Icelandic Commonwealth,http://www.wikidata.org/entity/Q62389
India,http://www.wikidata.org/entity/Q668
+India:Adajan,http://www.wikidata.org/entity/Q2722074
"India:Assam, Golaghat",http://www.wikidata.org/entity/Q1708160
India:Kerala State,http://www.wikidata.org/entity/Q1186
"India:Ahmedabad",http://www.wikidata.org/entity/Q1070
+India:Dhandhuka,http://www.wikidata.org/entity/Q1259584
+India:Khambhaliya,http://www.wikidata.org/entity/Q2120093
+India:Mehsana,http://www.wikidata.org/entity/Q1922283
+India:Patan,http://www.wikidata.org/entity/Q579702
+India:Siddhpur,http://www.wikidata.org/entity/Q2572203
+India:Uttar Pradesh,http://www.wikidata.org/entity/Q1498
+India:Telangana,http://www.wikidata.org/entity/Q677037
"India:Gujarat, Ahmedabad",http://www.wikidata.org/entity/Q1070
"India:Bardoli",http://www.wikidata.org/entity/Q712003
"India:Gujarat, Bardoli",http://www.wikidata.org/entity/Q712003
@@ -264,11 +276,14 @@ Iraq,http://www.wikidata.org/entity/Q796
Ireland,http://www.wikidata.org/entity/Q27
Israel,http://www.wikidata.org/entity/Q801
Italy,http://www.wikidata.org/entity/Q38
+Italy:Bologna,http://www.wikidata.org/entity/Q1891
Italy:Cagliari,http://www.wikidata.org/entity/Q1897
Italy:Lazio,http://www.wikidata.org/entity/Q1282
Italy:Milan,http://www.wikidata.org/entity/Q490
+Italy:Lombardia, Milan,http://www.wikidata.org/entity/Q490
Italy:Palermo,http://www.wikidata.org/entity/Q2656
Italy:Rome,http://www.wikidata.org/entity/Q220
+Italy:Turin,http://www.wikidata.org/entity/Q495
Ivory Coast,http://www.wikidata.org/entity/Q1008
Jamaica,http://www.wikidata.org/entity/Q766
Japan,http://www.wikidata.org/entity/Q17
@@ -301,6 +316,7 @@ Malawi,http://www.wikidata.org/entity/Q1020
Malaysia,http://www.wikidata.org/entity/Q833
Maldives,http://www.wikidata.org/entity/Q826
Malaysia:Kuala Lumpur,http://www.wikidata.org/entity/Q1865
+"Malaysia:Crocker Range National Park, Sabah, Malaysia (Borneo)",http://www.wikidata.org/entity/Q1974550
Mali,http://www.wikidata.org/entity/Q912
Malta,http://www.wikidata.org/entity/Q233
Marshall Islands,http://www.wikidata.org/entity/Q709
@@ -364,6 +380,17 @@ People's Republic of China,http://www.wikidata.org/entity/Q148
Peru,http://www.wikidata.org/entity/Q419
Peru:Lima,http://www.wikidata.org/entity/Q2868
Philippines,http://www.wikidata.org/entity/Q928
+"Philippines:National Capital Region, Makati City",http://www.wikidata.org/entity/Q1508
+"Philippines:NCR, Makati City",http://www.wikidata.org/entity/Q1508
+"Philippines:NCR, Caloocan City",http://www.wikidata.org/entity/Q1478
+"Philippines:NCR, Cavite City",http://www.wikidata.org/entity/Q1482
+"Philippines:NCR, Pasay City",http://www.wikidata.org/entity/Q17189
+"Philippines:NCR, Quezon City",http://www.wikidata.org/entity/Q1475
+"Philippines:NCR, San Juan City",http://www.wikidata.org/entity/Q749283
+"Philippines:NCR, Taguig City",http://www.wikidata.org/entity/Q1643
+"Philippines:Region 3 (Bulacan), San Jose del Monte City",http://www.wikidata.org/entity/Q2193
+"Philippines:Region 4A (Laguna), Calamba City",http://www.wikidata.org/entity/Q75978
+"Philippines:Region 4A (Rizal), Rodriguez",http://www.wikidata.org/entity/Q106825
Poland,http://www.wikidata.org/entity/Q36
Portugal,http://www.wikidata.org/entity/Q45
Principality of Turov and Pinsk,http://www.wikidata.org/entity/Q671362
@@ -458,6 +485,12 @@ USA:AL,http://www.wikidata.org/entity/Q173
"USA:Avondale, LA",http://www.wikidata.org/entity/Q79449
"USA:AVONDALE, LA",http://www.wikidata.org/entity/Q79449
"USA:CA, Alameda",http://www.wikidata.org/entity/Q490744
+"USA:CA, Humboldt County",http://www.wikidata.org/entity/Q109651
+"USA:CA, Marin County",http://www.wikidata.org/entity/Q108117
+"USA:CA, Orange County",http://www.wikidata.org/entity/Q5925
+"USA:CA, San Francisco County",http://www.wikidata.org/entity/Q13188841
+"USA:CA, Santa Clara County",http://www.wikidata.org/entity/Q110739
+"USA:CA, Sonoma County",http://www.wikidata.org/entity/Q108067
"USA:California, Los Angeles county",http://www.wikidata.org/entity/Q104994
"USA:California,Los Angeles County",http://www.wikidata.org/entity/Q104994
"USA:California, San Diego county",http://www.wikidata.org/entity/Q108143
@@ -493,6 +526,7 @@ USA:AL,http://www.wikidata.org/entity/Q173
"USA:LOCKPORT, LA",http://www.wikidata.org/entity/Q2194112
"USA:Maringouin, LA",http://www.wikidata.org/entity/Q2673176
"USA:MARINGOUIN, LA",http://www.wikidata.org/entity/Q2673176
+"USA:Maryland",http://www.wikidata.org/entity/Q1391
"USA:Marrero, LA",http://www.wikidata.org/entity/Q1902531
"USA:MARRERO, LA",http://www.wikidata.org/entity/Q1902531
"USA:Massachusetts, Middlesex county",http://www.wikidata.org/entity/Q54073
@@ -506,10 +540,12 @@ USA:New Hampshire,http://www.wikidata.org/entity/Q759
"USA:New Jersey, Bergen county",http://www.wikidata.org/entity/Q112915
"USA:New Jersey, Burlington county",http://www.wikidata.org/entity/Q138141
"USA:New Jersey, Essex county",http://www.wikidata.org/entity/Q128077
+"USA:Pennsylvania, Philadelphia county",http://www.wikidata.org/entity/Q496900
"USA:Raceland, LA",http://www.wikidata.org/entity/Q2154341
"USA:RACELAND, LA",http://www.wikidata.org/entity/Q2154341
"USA:Saint Rose, LA",http://www.wikidata.org/entity/Q7402139
"USA:SAINT ROSE, LA",http://www.wikidata.org/entity/Q7402139
+"USA:SC, HORRY",http://www.wikidata.org/entity/Q502288
"USA:Slidell LA",http://www.wikidata.org/entity/Q988156
"USA:SLIDELL LA",http://www.wikidata.org/entity/Q988156
"USA:Snohomish County,WA",http://www.wikidata.org/entity/Q110403