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bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
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yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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dict_ontology_standardization
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2020-09-28
new countries; updated genbank/sra scripts to manage more specimen sources
AndreaGuarracino
2020-09-25
added new New Zealand entries
AndreaGuarracino
2020-09-04
sra script updated for managing more locations
AndreaGuarracino
2020-08-29
fixed few countries ontology terms; added a new species
AndreaGuarracino
2020-08-24
fixed protocol for the dictionary entries that caused validation problems
AndreaGuarracino
2020-08-23
added new countries and speciesman sources: fixed few country entries
AndreaGuarracino
2020-08-22
lots of new dictionary terms
AndreaGuarracino
2020-07-10
other term for Homo sapiens (for SRA samples)
Andrea Guarracino
2020-07-07
if the technology is not found, the YAML file is not created; managed longer ↵
AndreaGuarracino
species strings
2020-07-06
fix ncbi_countries dictionary
AndreaGuarracino
2020-07-06
new terms in the ncbi_countries dictionary
Andrea Guarracino
2020-07-06
two more terms in the ncbi_sequencing_technology dictionary
Andrea Guarracino
2020-07-06
new terms in the sequencing_technology dictionary
Andrea Guarracino
2020-06-22
added new dictionary entries
AndreaGuarracino
2020-06-22
new entries for the EBI samples
AndreaGuarracino
2020-06-22
corrected the wrong entities
Andrea Guarracino
http instead of https entity instead of wiki
2020-06-12
species dictionary
Andrea Guarracino
2020-06-07
the script is more verbose; added other countries
AndreaGuarracino
2020-05-31
Added new speciesman sources
Andrea Guarracino
2020-05-31
Added new sequencing technologies
Andrea Guarracino
2020-05-31
Added new countries
Andrea Guarracino
2020-04-29
Reverting country list back, something went wrong there
lltommy
2020-04-28
Updated with new terms
Andrea Guarracino
2020-04-28
Updated with new terms
Andrea Guarracino
2020-04-26
Updating dics
lltommy
2020-04-23
added nasal swab for several new IDs
Andrea Guarracino
2020-04-23
Adding a third sequence technology option
lltommy
2020-04-22
created dict for host health status
Andrea Guarracino
2020-04-22
added some rows in the speciesman dict
Andrea Guarracino
2020-04-22
added some rows in the ncbi_countries dict
Andrea Guarracino
2020-04-21
Tweak handling of "coverage" also fix typo
Peter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-20
fix MinION to ONT
Tazro Inutano Ohta
2020-04-20
Fixing string -> URI in speciman, plus other things
lltommy
2020-04-19
Further updates to our NCBI dictonaries to translate this s*** to our model
lltommy
2020-04-19
Updating NCBI dictonaries, adding UI options, small yaml schema changes
lltommy
2020-04-18
dictionaries for mapping
Andrea Guarracino
2020-04-18
ncbi_speciesman_source mapping
Andrea Guarracino
2020-04-18
Delete dict_ontology_standardization
Andrea Guarracino
2020-04-18
ncbi_speciesman_source mapping
Andrea Guarracino