index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
path:
root
/
scripts
/
dict_ontology_standardization
Age
Commit message (
Collapse
)
Author
2020-06-22
corrected the wrong entities
Andrea Guarracino
http instead of https entity instead of wiki
2020-06-12
species dictionary
Andrea Guarracino
2020-06-07
the script is more verbose; added other countries
AndreaGuarracino
2020-05-31
Added new speciesman sources
Andrea Guarracino
2020-05-31
Added new sequencing technologies
Andrea Guarracino
2020-05-31
Added new countries
Andrea Guarracino
2020-04-29
Reverting country list back, something went wrong there
lltommy
2020-04-28
Updated with new terms
Andrea Guarracino
2020-04-28
Updated with new terms
Andrea Guarracino
2020-04-26
Updating dics
lltommy
2020-04-23
added nasal swab for several new IDs
Andrea Guarracino
2020-04-23
Adding a third sequence technology option
lltommy
2020-04-22
created dict for host health status
Andrea Guarracino
2020-04-22
added some rows in the speciesman dict
Andrea Guarracino
2020-04-22
added some rows in the ncbi_countries dict
Andrea Guarracino
2020-04-21
Tweak handling of "coverage" also fix typo
Peter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-20
fix MinION to ONT
Tazro Inutano Ohta
2020-04-20
Fixing string -> URI in speciman, plus other things
lltommy
2020-04-19
Further updates to our NCBI dictonaries to translate this s*** to our model
lltommy
2020-04-19
Updating NCBI dictonaries, adding UI options, small yaml schema changes
lltommy
2020-04-18
dictionaries for mapping
Andrea Guarracino
2020-04-18
ncbi_speciesman_source mapping
Andrea Guarracino
2020-04-18
Delete dict_ontology_standardization
Andrea Guarracino
2020-04-18
ncbi_speciesman_source mapping
Andrea Guarracino