bh20-seq-resource - Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

Age	Commit message (Expand)	Author
2020-11-14	check empty strings	AndreaGuarracino
2020-11-13	fix check date sra script	AndreaGuarracino
2020-11-13	generation of dates a little more robust	AndreaGuarracino
2020-11-13	to not create YAML files with date before 2019 December	AndreaGuarracino
2020-11-12	managed the assembly_method in the scripts, doc, and the example templates	AndreaGuarracino
2020-11-11	create_sra_metadata script doesn't trick the quality control about missing da...	AndreaGuarracino
2020-09-28	new countries; updated genbank/sra scripts to manage more specimen sources	AndreaGuarracino
2020-09-28	genbank and sra scripts more picky on the ontologies; added utils.py for shar...	AndreaGuarracino
2020-09-04	fixed bugs in in index management and type conversion	AndreaGuarracino
2020-09-04	sra script re-enabled, ready for tests	AndreaGuarracino
2020-09-04	added in the sra script an option to include only a subset of ids	AndreaGuarracino
2020-09-04	sra script updated for managing more locations	AndreaGuarracino
2020-09-04	synchronized the create_sra_metadata.py script with the latest updates	AndreaGuarracino
2020-08-23	genbank/sra scripts update to be more generic with the specimen sources	AndreaGuarracino
2020-08-22	genbank/sra scripts updated to read the dictionaries in a more general way	AndreaGuarracino
2020-07-12	added a suffix to distinguish which script created the error/warning files	AndreaGuarracino
2020-07-10	metadata with missing host_species are not created	AndreaGuarracino
2020-07-10	an output file is created with the accessions for which no YAML file is created	AndreaGuarracino
2020-07-10	updated metadata source	AndreaGuarracino
2020-07-07	if the technology is not found, the YAML file is not created; managed longer ...	AndreaGuarracino
2020-07-06	renamed sra script; added seq technology in its additional information field ...	AndreaGuarracino