index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-07-15
Web: add license to input form
Pjotr Prins
2020-07-13
Add ontology and schema for license information. For review.
Pjotr Prins
2020-05-30
Some spelling in the YAML example
Pjotr Prins
2020-05-13
Changed example not to make it a reference genome.
Pjotr Prins
2020-04-30
Last addition/edits to the meta data schema
lltommy
2020-04-28
Decision to settle for float instead of integers for the coverage
lltommy
2020-04-28
Whatever happend to the minimal metadata, I restored it
lltommy
2020-04-28
Adding field 'publication' to the maximum example
lltommy
2020-04-28
Changes to the structure - we use lists now instead of strings where it makes...
lltommy
2020-04-22
updating example with ontology term for host_health_status
lltommy
2020-04-22
Small changes all around, trying to make the importer/metadata better
lltommy
2020-04-21
Update metadata.yaml
Ben Busby
2020-04-21
Updated shex and manditory fields and stuff
lltommy
2020-04-20
Add ShEx validation
Peter Amstutz
2020-04-20
Making collection date and collection location MANDATORY fields, turning orci...
lltommy
2020-04-20
Fixing string -> URI in speciman, plus other things
lltommy
2020-04-19
small updates to the yaml schema, updating the example files
lltommy
2020-04-15
submitter_orchid -> submitter_orcid
Stian Soiland-Reyes
2020-04-15
Changing vaccination URI
lltommy
2020-04-14
Updated yaml schema and examples - plus ShEX shape to go along with it. Still...
lltommy
2020-04-13
Starting to turn values into IRIs ...
lltommy
2020-04-11
Adding descriptions to the yml schema, slight changes to the yml schema
lltommy
2020-04-10
Propagating metadata to output works now.
Peter Amstutz
2020-04-10
Fix swapped fasta/fastq
Peter Amstutz
2020-04-10
Updating schema and examples, including URIs
lltommy
2020-04-09
Add "sequencefile" for the metadata subject.
Peter Amstutz
2020-04-09
Updating schema and examples. This is still work in progress but we get there
lltommy
2020-04-07
Add metadata validation with schema-salad
Peter Amstutz
2020-04-07
adding dummy metadata qc to the project
lltommy
2020-04-06
README and example
Pjotr Prins