index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-11-15
removed provider_sample_id references
AndreaGuarracino
2020-11-12
managed the assembly_method in the scripts, doc, and the example templates
AndreaGuarracino
2020-11-12
updated alignment_protocol field in the script, doc, and the example templates
AndreaGuarracino
2020-11-10
Virtuoso: run script
Pjotr Prins
2020-11-10
Document Arvados runner
Pjotr Prins
2020-11-06
Country trouble shooting
Pjotr Prins
2020-11-06
Uploader script improvements
Pjotr Prins
2020-11-06
Adding Tennessee items
Pjotr Prins
2020-11-06
UTHSC upload info
Pjotr Prins
2020-11-06
Working on upload
Pjotr Prins
2020-11-05
Using 'DOCS' instead of 'BLOG'
Pjotr Prins
2020-11-04
virtuoso-ose: install and settings
Pjotr Prins
2020-10-27
Updating docs
Pjotr Prins
2020-10-26
Update blog
Pjotr Prins
2020-09-29
esr_samples script refactoring; added a reference of the esr_samples script ↵
AndreaGuarracino
in the blog as an example of how to parse metadata
2020-08-27
updated dependency from clustalw to minimap2; the genbank script no longer ↵
AndreaGuarracino
creates YAML/FASTA pairs for too short sequences
2020-08-26
Docs
Pjotr Prins
2020-08-26
Fix underscores
Pjotr Prins
2020-08-25
Using Arvados
Pjotr Prins
2020-08-24
Adding meta keywords to HTML
Pjotr Prins
2020-08-24
genbank script documented in blog
Pjotr Prins
2020-08-24
Genbank upload
Pjotr Prins
2020-08-24
Images
Pjotr Prins
2020-08-23
More info
Pjotr Prins
2020-08-23
Textual changes
Pjotr Prins
2020-08-22
Generated
Pjotr Prins
2020-08-22
Relaxing the location attribute
Pjotr Prins
2020-08-22
More on contacting
Pjotr Prins
2020-08-22
Repositioning content
Pjotr Prins
2020-08-22
Small text fixes
Pjotr Prins
2020-07-27
added in the FAQ three questions from the BCC 2020 attendees
AndreaGuarracino
2020-07-27
updated org files, removing unuseful information and adding the BCC2020 ↵
AndreaGuarracino
video talk and poster links in the about page
2020-07-21
Working on search
Pjotr Prins
2020-07-21
Documenting exports and REST API
Pjotr Prins
2020-07-19
EBI form filling
Pjotr Prins
2020-07-19
Wiring up export function
Pjotr Prins
2020-07-18
Updating stylesheets and about page after receiving feedback.
Pjotr Prins
2020-07-17
Preparing for EBI submission
Pjotr Prins
2020-07-17
Started EBI submission
Pjotr Prins
2020-07-17
Started documenting EBI submission
Pjotr Prins
2020-07-17
Update generated docs
Pjotr Prins
2020-07-17
Blog: workflows
Pjotr Prins
2020-07-16
Addes ESR logo and cropped CWL logo
Pjotr Prins
2020-07-15
License RDF
Pjotr Prins
2020-07-15
Add RDF output
Pjotr Prins
2020-07-15
Load metadata locally without pkg_resources
Pjotr Prins
2020-07-15
Update Guix install
Pjotr Prins
2020-07-13
Add ontology and schema for license information. For review.
Pjotr Prins
2020-07-12
Generate About page
Pjotr Prins
2020-07-12
Docs: started on metadata modification
Pjotr Prins
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