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authorAndreaGuarracino2020-08-27 00:18:24 +0200
committerAndreaGuarracino2020-08-27 00:18:24 +0200
commit4299c750728bbad4bdbf0311ff2a4b9c65d9883c (patch)
tree07515a9ad6d07eca22853806f879fb39d2375c09 /doc
parentb69b8560132786e16ea6a997d65fd8c43381cc03 (diff)
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updated dependency from clustalw to minimap2; the genbank script no longer creates YAML/FASTA pairs for too short sequences
Diffstat (limited to 'doc')
-rw-r--r--doc/INSTALL.md2
1 files changed, 1 insertions, 1 deletions
diff --git a/doc/INSTALL.md b/doc/INSTALL.md
index 3b270dd..e31b7d7 100644
--- a/doc/INSTALL.md
+++ b/doc/INSTALL.md
@@ -59,7 +59,7 @@ WIP: add gunicorn container
Currently the full webserver container deploy command looks like
```
-penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$ env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-oinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc clustalw python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run
+penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$ env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-oinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc minimap2 python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run
```
Note: see above on GUIX_PACKAGE_PATH.