index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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path:
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bh20simplewebuploader
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main.py
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Author
2020-11-09
Extract PDH from result and construct URIs from that
fasta-subset-from-query
Peter Amstutz
2020-11-09
Make resource link work for both portable data hashes and sample id
Peter Amstutz
2020-10-28
Country information
Pjotr Prins
2020-10-28
List by country and added to map
Pjotr Prins
2020-10-28
Fix DEMO links
Pjotr Prins
2020-10-28
Adding more metadata to resource uri
Pjotr Prins
2020-10-28
Create permalink and some output
Pjotr Prins
2020-08-26
typos in the code; little code refactoring
AndreaGuarracino
2020-08-22
Repositioning content
Pjotr Prins
2020-07-21
Working on search
Pjotr Prins
2020-07-21
Documenting exports and REST API
Pjotr Prins
2020-07-20
Adding an endpoint for documentation
Pjotr Prins
2020-07-20
Start Public REST API
Pjotr Prins
2020-07-19
EBI form filling
Pjotr Prins
2020-07-19
Moch XML output
Pjotr Prins
2020-07-19
Search table
Pjotr Prins
2020-07-19
Search table
Pjotr Prins
2020-07-19
Wiring up export function
Pjotr Prins
2020-07-18
Updating stylesheets and about page after receiving feedback.
Pjotr Prins
2020-07-17
Map refactoring, now shows on HOME
Pjotr Prins
2020-07-17
Refactoring map code
Pjotr Prins
2020-07-17
Remove extra exclamation mark
Pjotr Prins
2020-07-16
Add "validated" and "running workflows" tables to status
analysis-refactor
Peter Amstutz
2020-07-16
Improve uploader reporting.
Peter Amstutz
2020-07-16
Improve upload form layout.
Peter Amstutz
2020-07-16
Refactor analysis code into a class
Peter Amstutz
2020-07-16
Add edit link for download page
Pjotr Prins
2020-07-16
Add edit icon to text on github
Pjotr Prins
2020-07-15
Web: add license to input form
Pjotr Prins
2020-07-15
Load metadata locally without pkg_resources
Pjotr Prins
2020-07-12
CounterDB
Pjotr Prins
2020-07-09
Skip certificate check - this was upstreamed in Arvados, so we can remove later
Pjotr Prins
2020-07-08
Add --revalidate and fix checking/updating properties.
Peter Amstutz
2020-07-08
Get count from arvados
Peter Amstutz
2020-07-08
Fetch status as anonymous user
Peter Amstutz
2020-07-08
Split upload tab. Add upload status tab.
Peter Amstutz
2020-06-17
Slighlty alter SPARQL query to truley sumarize locations for contients. Most ...
lltommy
2020-06-16
starting to include a map
lltommy
2020-06-15
Adding endpoints using grouping of continents
lltommy
2020-06-14
Tried to make a start with the 'demo' part, table works, drilling down not
lltommy
2020-06-12
Adding endpoint getCountByGPS which could be used to draw a map
lltommy
2020-06-11
Fixing #65 and adding additional country information
lltommy
2020-05-29
Blog stuff
Pjotr Prins
2020-05-28
Web: debugging metadata submission
Pjotr Prins
2020-05-27
Wiring up blog entries
Pjotr Prins
2020-05-24
Download page
Pjotr Prins
2020-05-24
Display About/FAQ
Pjotr Prins
2020-05-23
Menu and forms
Pjotr Prins
2020-05-23
Web: put in menu routing
Pjotr Prins
2020-05-16
Counting number of sequences
Pjotr Prins
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