| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-04-10 | Propagating metadata to output works now. | Peter Amstutz | |
| Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-04-10 | Fix swapped fasta/fastq | Peter Amstutz | |
| Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-04-10 | Add qc_fasta | Peter Amstutz | |
| 2020-04-10 | Fix up fasta/fastq validation | Peter Amstutz | |
| 2020-04-10 | Validate & propagate metadata | Peter Amstutz | |
| 2020-04-10 | Merge pull request #6 from uniqueg/fa_fq_validation | Pjotr Prins | |
| validate seq format with magic file | |||
| 2020-04-10 | Fixed TypeError: 'module' object is not callable | Pjotr Prins | |
| 2020-04-10 | validate seq format with magic file | Alex Kanitz | |
| 2020-04-10 | Updating schema and examples, including URIs | lltommy | |
| 2020-04-09 | Moved Guix documentation into separate file (as it confused people ;) | Pjotr Prins | |
| 2020-04-09 | Add "sequencefile" for the metadata subject. | Peter Amstutz | |
| 2020-04-09 | Adding functionality of turning keys into ontology terms (URI). This is work ↵ | lltommy | |
| in progress - of course! | |||
| 2020-04-09 | Updating schema and examples. This is still work in progress but we get there | lltommy | |
| 2020-04-08 | Fastq now runs through fastq2fasta pipeline | Peter Amstutz | |
| then gets added to pangenome analysis. | |||
| 2020-04-07 | Add metadata validation with schema-salad | Peter Amstutz | |
| 2020-04-07 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |
| 2020-04-07 | adding dummy metadata qc to the project | lltommy | |
| 2020-04-07 | Now moves collections into 'validated sequences' project | Peter Amstutz | |
| Improve logging for seq service Fix uploader bug Runs workflow with all validated sequences. | |||
| 2020-04-06 | - Added some output and run main() by default | Pjotr Prins | |
| - Disabled ssl checking which does not work if you lack a certificate | |||
| 2020-04-06 | Remove backup file | Pjotr Prins | |
| 2020-04-06 | Add service to automatically run a workflow on collections uploaded to a ↵ | Peter Amstutz | |
| project. | |||
| 2020-04-06 | Now uploads data | Peter Amstutz | |
| 2020-04-06 | Start project | Peter Amstutz | |
 |
index : bh20-seq-resource | |
| Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis |
| aboutsummaryrefslogtreecommitdiff |
path: root/bh20sequploader