index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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bh20sequploader
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2020-04-09
Adding functionality of turning keys into ontology terms (URI). This is work ↵
lltommy
in progress - of course!
2020-04-09
Updating schema and examples. This is still work in progress but we get there
lltommy
2020-04-08
Fastq now runs through fastq2fasta pipeline
Peter Amstutz
then gets added to pangenome analysis.
2020-04-07
Add metadata validation with schema-salad
Peter Amstutz
2020-04-07
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-04-07
adding dummy metadata qc to the project
lltommy
2020-04-07
Now moves collections into 'validated sequences' project
Peter Amstutz
Improve logging for seq service Fix uploader bug Runs workflow with all validated sequences.
2020-04-06
- Added some output and run main() by default
Pjotr Prins
- Disabled ssl checking which does not work if you lack a certificate
2020-04-06
Remove backup file
Pjotr Prins
2020-04-06
Add service to automatically run a workflow on collections uploaded to a ↵
Peter Amstutz
project.
2020-04-06
Now uploads data
Peter Amstutz
2020-04-06
Start project
Peter Amstutz