Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-05-06 | Adding additional frontend option (PATO_0001340) to QC | lltommy | |
2020-04-30 | Handle running in a container with no username | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-30 | Last addition/edits to the meta data schema | lltommy | |
2020-04-29 | Use subprocess invocation is backwards compatible with Python 3.5 | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-29 | Add reference | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-28 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |
2020-04-28 | Decision to settle for float instead of integers for the coverage | lltommy | |
2020-04-28 | Call clustalw to compare sequence to reference | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-28 | Changes to the structure - we use lists now instead of strings where it ↵ | lltommy | |
makes sense. This allows us to have multiple values where in makes sense | |||
2020-04-23 | adding a submitter comment field | lltommy | |
2020-04-23 | Adding a third sequence technology option | lltommy | |
2020-04-23 | Merge branch 'master' into patch-3 | LLTommy | |
2020-04-22 | Fixing ShEx expression, one ? too much | lltommy | |
2020-04-22 | Forgot to add _id | lltommy | |
2020-04-22 | Including restrictions to the host status | lltommy | |
2020-04-22 | Small changes all around, trying to make the importer/metadata better | lltommy | |
2020-04-21 | Work around CWL content size limit by chunking | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | add noLinkCheck to specimen_source2 | Peter Amstutz | |
2020-04-21 | Tweak handling of "coverage" also fix typo | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | Working on NCBI import | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | Updated shex and manditory fields and stuff | lltommy | |
2020-04-20 | Reconsidered these should be noLinkCheck | Peter Amstutz | |
2020-04-20 | Add identity:true to collection_location | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-20 | Schema changes from @LLTommy | Peter Amstutz | |
2020-04-20 | Better handling of duplicate sequences | Peter Amstutz | |
Also save original fasta label in metadata | |||
2020-04-20 | Make doc not contradict option list | Adam Novak | |
2020-04-20 | Put back Intersex with the closest PATO equivalent | Adam Novak | |
These options still disagree with the doc string in the schema. | |||
2020-04-20 | Add ShEx validation | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-20 | Making collection date and collection location MANDATORY fields, turning ↵ | lltommy | |
orcid into IRI | |||
2020-04-20 | Fixing string -> URI in speciman, plus other things | lltommy | |
2020-04-19 | small updates to the yaml schema, updating the example files | lltommy | |
2020-04-19 | Updating NCBI dictonaries, adding UI options, small yaml schema changes | lltommy | |
2020-04-19 | Merge pull request #24 from adamnovak/dropdowns | Pjotr Prins | |
Add dropdown support to web uploader metadata form | |||
2020-04-18 | Extending yaml schema a bit and adding additional information for the UI | lltommy | |
2020-04-17 | Copy NCIT IRIs back to schema doc | Adam Novak | |
2020-04-17 | Spruce up the options file and add missing values | Adam Novak | |
2020-04-17 | Create option dropdowns from an options file | Adam Novak | |
2020-04-15 | Typo: submitter_orchid -> submitter_orcid | Stian Soiland-Reyes | |
2020-04-15 | Changing vaccination URI | lltommy | |
2020-04-15 | Fixing small typo | lltommy | |
2020-04-15 | relaxing regEx cause orichids can look like whatever it seems, not only numbers | lltommy | |
2020-04-14 | Updated yaml schema and examples - plus ShEX shape to go along with it. ↵ | lltommy | |
Still work in progress but getting better and better I guess | |||
2020-04-13 | Inject path to find module bh20sequploader | Pjotr Prins | |
2020-04-13 | Add __init__.py and fix imports | Peter Amstutz | |
2020-04-13 | Closes #5 | Pjotr Prins | |
2020-04-13 | Starting to turn values into IRIs ... | lltommy | |
2020-04-11 | Adding noLinkCheck to root | lltommy | |
2020-04-11 | Adding descriptions to the yml schema, slight changes to the yml schema | lltommy | |
2020-04-10 | Propagating metadata to output works now. | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-10 | Fix swapped fasta/fastq | Peter Amstutz | |
Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> |