| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-10-01 | show more information in the error messages | AndreaGuarracino | |
| 2020-08-28 | qc_fasta returns also the seq_type; verified that only one FASTA is sent at ↵ | AndreaGuarracino | |
| a time; code cleaning | |||
| 2020-08-26 | typos in the code; little code refactoring | AndreaGuarracino | |
| 2020-07-16 | Report similarity == 0 | Peter Amstutz | |
| Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-07-07 | minimap2 returns nothing when there is no alignment. | Peter Amstutz | |
| 2020-07-07 | Use minimap2 instead of clustalw for fasta QC | Peter Amstutz | |
| Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-07-03 | Add --skip-qc for faster batch import | Peter Amstutz | |
| 2020-07-03 | Adding --skip-qc | Peter Amstutz | |
| Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-07-03 | Fix qc_fasta bug closing stream. | Peter Amstutz | |
| 2020-06-22 | Better invalid sequence QC handling | Peter Amstutz | |
| 2020-06-22 | Handle upload & assembly of gzipped, paired-end fastq | Peter Amstutz | |
| 2020-05-29 | Improved error output for the web uploader | Pjotr Prins | |
| 2020-04-29 | Use subprocess invocation is backwards compatible with Python 3.5 | Peter Amstutz | |
| Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-04-28 | Call clustalw to compare sequence to reference | Peter Amstutz | |
| Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-04-10 | Fix swapped fasta/fastq | Peter Amstutz | |
| Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-04-10 | Add qc_fasta | Peter Amstutz | |
 |
index : bh20-seq-resource | |
| Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis |
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