bh20-seq-resource - Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

Age	Commit message (Expand)	Author
2020-11-06	Uploader script improvements	Pjotr Prins
2020-10-01	sequence divergence to 5% for minimap2 in the FASTA quality control	AndreaGuarracino
2020-10-01	show more information in the error messages	AndreaGuarracino
2020-08-28	qc_fasta returns also the seq_type; verified that only one FASTA is sent at a...	AndreaGuarracino
2020-08-26	typos in the code; little code refactoring	AndreaGuarracino
2020-07-16	Report similarity == 0	Peter Amstutz
2020-07-07	minimap2 returns nothing when there is no alignment.	Peter Amstutz
2020-07-07	Use minimap2 instead of clustalw for fasta QC	Peter Amstutz
2020-07-03	Add --skip-qc for faster batch import	Peter Amstutz
2020-07-03	Adding --skip-qc	Peter Amstutz
2020-07-03	Fix qc_fasta bug closing stream.	Peter Amstutz
2020-06-22	Better invalid sequence QC handling	Peter Amstutz
2020-06-22	Handle upload & assembly of gzipped, paired-end fastq	Peter Amstutz
2020-05-29	Improved error output for the web uploader	Pjotr Prins
2020-04-29	Use subprocess invocation is backwards compatible with Python 3.5	Peter Amstutz
2020-04-28	Call clustalw to compare sequence to reference	Peter Amstutz
2020-04-10	Fix swapped fasta/fastq	Peter Amstutz
2020-04-10	Add qc_fasta	Peter Amstutz