bh20-seq-resource - Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

Age	Commit message (Expand)	Author
2020-08-28	qc_fasta returns also the seq_type; verified that only one FASTA is sent at a...	AndreaGuarracino
2020-08-26	updated parameter name	AndreaGuarracino
2020-07-16	Improve uploader reporting.	Peter Amstutz
2020-07-08	Give uploader an option to trust local validation (for batch imports)upload-download-status	Peter Amstutz
2020-07-08	Uploader checks for duplicates	Peter Amstutz
2020-07-07	Use minimap2 instead of clustalw for fasta QC	Peter Amstutz
2020-07-05	Add bh20-seq-analyzer --print-status	Peter Amstutz
2020-07-03	Add --skip-qc for faster batch import	Peter Amstutz
2020-07-03	Adding --skip-qc	Peter Amstutz
2020-07-03	Fix single arg upload	Peter Amstutz
2020-06-22	Handle upload & assembly of gzipped, paired-end fastq	Peter Amstutz
2020-05-29	Improved error output for the web uploader	Pjotr Prins
2020-05-28	Web: debugging metadata submission	Pjotr Prins
2020-05-28	Uploader: validate metadata first (it is faster)	Pjotr Prins
2020-04-30	Handle running in a container with no username	Peter Amstutz
2020-04-21	Work around CWL content size limit by chunking	Peter Amstutz
2020-04-21	Working on NCBI import	Peter Amstutz
2020-04-20	Add ShEx validation	Peter Amstutz
2020-04-13	Inject path to find module bh20sequploader	Pjotr Prins
2020-04-13	Add __init__.py and fix imports	Peter Amstutz
2020-04-13	Closes #5	Pjotr Prins
2020-04-10	Fix up fasta/fastq validation	Peter Amstutz
2020-04-10	Validate & propagate metadata	Peter Amstutz
2020-04-10	Merge pull request #6 from uniqueg/fa_fq_validation	Pjotr Prins
2020-04-10	Fixed TypeError: 'module' object is not callable	Pjotr Prins
2020-04-10	validate seq format with magic file	Alex Kanitz
2020-04-09	Moved Guix documentation into separate file (as it confused people ;)	Pjotr Prins
2020-04-08	Fastq now runs through fastq2fasta pipeline	Peter Amstutz
2020-04-07	Add metadata validation with schema-salad	Peter Amstutz
2020-04-07	Now moves collections into 'validated sequences' project	Peter Amstutz
2020-04-06	- Added some output and run main() by default	Pjotr Prins
2020-04-06	Add service to automatically run a workflow on collections uploaded to a proj...	Peter Amstutz
2020-04-06	Now uploads data	Peter Amstutz
2020-04-06	Start project	Peter Amstutz