bh20-seq-resource - Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

Age	Commit message (Expand)	Author
2020-04-30	Handle running in a container with no username•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>	Peter Amstutz
2020-04-21	Work around CWL content size limit by chunking•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>	Peter Amstutz
2020-04-21	Working on NCBI import•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>	Peter Amstutz
2020-04-20	Add ShEx validation•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>	Peter Amstutz
2020-04-13	Inject path to find module bh20sequploader	Pjotr Prins
2020-04-13	Add __init__.py and fix imports	Peter Amstutz
2020-04-13	Closes #5	Pjotr Prins
2020-04-10	Fix up fasta/fastq validation	Peter Amstutz
2020-04-10	Validate & propagate metadata	Peter Amstutz
2020-04-10	Merge pull request #6 from uniqueg/fa_fq_validation•••validate seq format with magic file	Pjotr Prins
2020-04-10	Fixed TypeError: 'module' object is not callable	Pjotr Prins
2020-04-10	validate seq format with magic file	Alex Kanitz
2020-04-09	Moved Guix documentation into separate file (as it confused people ;)	Pjotr Prins
2020-04-08	Fastq now runs through fastq2fasta pipeline•••then gets added to pangenome analysis.	Peter Amstutz
2020-04-07	Add metadata validation with schema-salad	Peter Amstutz
2020-04-07	Now moves collections into 'validated sequences' project•••Improve logging for seq service Fix uploader bug Runs workflow with all validated sequences.	Peter Amstutz
2020-04-06	- Added some output and run main() by default•••- Disabled ssl checking which does not work if you lack a certificate	Pjotr Prins
2020-04-06	Add service to automatically run a workflow on collections uploaded to a proj...	Peter Amstutz
2020-04-06	Now uploads data	Peter Amstutz
2020-04-06	Start project	Peter Amstutz