index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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bh20sequploader
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main.py
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2020-05-28
Web: debugging metadata submission
Pjotr Prins
2020-05-28
Uploader: validate metadata first (it is faster)
Pjotr Prins
2020-04-30
Handle running in a container with no username
Peter Amstutz
2020-04-21
Work around CWL content size limit by chunking
Peter Amstutz
2020-04-21
Working on NCBI import
Peter Amstutz
2020-04-20
Add ShEx validation
Peter Amstutz
2020-04-13
Inject path to find module bh20sequploader
Pjotr Prins
2020-04-13
Add __init__.py and fix imports
Peter Amstutz
2020-04-13
Closes #5
Pjotr Prins
2020-04-10
Fix up fasta/fastq validation
Peter Amstutz
2020-04-10
Validate & propagate metadata
Peter Amstutz
2020-04-10
Merge pull request #6 from uniqueg/fa_fq_validation
Pjotr Prins
2020-04-10
Fixed TypeError: 'module' object is not callable
Pjotr Prins
2020-04-10
validate seq format with magic file
Alex Kanitz
2020-04-09
Moved Guix documentation into separate file (as it confused people ;)
Pjotr Prins
2020-04-08
Fastq now runs through fastq2fasta pipeline
Peter Amstutz
2020-04-07
Add metadata validation with schema-salad
Peter Amstutz
2020-04-07
Now moves collections into 'validated sequences' project
Peter Amstutz
2020-04-06
- Added some output and run main() by default
Pjotr Prins
2020-04-06
Add service to automatically run a workflow on collections uploaded to a proj...
Peter Amstutz
2020-04-06
Now uploads data
Peter Amstutz
2020-04-06
Start project
Peter Amstutz