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path: root/bh20sequploader/bh20seq-schema.yml
AgeCommit message (Collapse)Author
2020-11-12Trying to fix the submitter shape, shex and yamllltommy
2020-11-12Proposed new technology shape/yaml structurelltommy
2020-11-07RDF: use URIsPjotr Prins
2020-11-04fixed sequence_assembly_method field descriptionAndreaGuarracino
2020-07-16Make license optional for nowPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-07-16Make license optional for nowPjotr Prins
2020-07-15License RDFPjotr Prins
2020-07-15Add RDF outputPjotr Prins
2020-07-15Web: add license to input formPjotr Prins
2020-07-13Add ontology and schema for license information. For review.Pjotr Prins
2020-07-08Try to fix lab_address wrong predicate, fix submitter shape on the way and ↵lltommy
hopefully brought it in synch with the yaml
2020-05-29Changed doc comment in schemaPjotr Prins
2020-05-28Web: debugging metadata submissionPjotr Prins
2020-05-06Adding additional frontend option (PATO_0001340) to QClltommy
2020-04-30Last addition/edits to the meta data schemalltommy
2020-04-28Decision to settle for float instead of integers for the coveragelltommy
2020-04-28Changes to the structure - we use lists now instead of strings where it ↵lltommy
makes sense. This allows us to have multiple values where in makes sense
2020-04-23adding a submitter comment fieldlltommy
2020-04-23Adding a third sequence technology optionlltommy
2020-04-22Forgot to add _idlltommy
2020-04-22Including restrictions to the host statuslltommy
2020-04-22Small changes all around, trying to make the importer/metadata betterlltommy
2020-04-21add noLinkCheck to specimen_source2Peter Amstutz
2020-04-21Tweak handling of "coverage" also fix typoPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-21Working on NCBI importPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-21Updated shex and manditory fields and stufflltommy
2020-04-20Reconsidered these should be noLinkCheckPeter Amstutz
2020-04-20Add identity:true to collection_locationPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-20Schema changes from @LLTommyPeter Amstutz
2020-04-20Better handling of duplicate sequencesPeter Amstutz
Also save original fasta label in metadata
2020-04-20Making collection date and collection location MANDATORY fields, turning ↵lltommy
orcid into IRI
2020-04-20Fixing string -> URI in speciman, plus other thingslltommy
2020-04-19small updates to the yaml schema, updating the example fileslltommy
2020-04-19Updating NCBI dictonaries, adding UI options, small yaml schema changeslltommy
2020-04-19Merge pull request #24 from adamnovak/dropdownsPjotr Prins
Add dropdown support to web uploader metadata form
2020-04-18Extending yaml schema a bit and adding additional information for the UIlltommy
2020-04-17Copy NCIT IRIs back to schema docAdam Novak
2020-04-15Typo: submitter_orchid -> submitter_orcidStian Soiland-Reyes
2020-04-15Changing vaccination URIlltommy
2020-04-14Updated yaml schema and examples - plus ShEX shape to go along with it. ↵lltommy
Still work in progress but getting better and better I guess
2020-04-13Starting to turn values into IRIs ...lltommy
2020-04-11Adding noLinkCheck to rootlltommy
2020-04-11Adding descriptions to the yml schema, slight changes to the yml schemalltommy
2020-04-10Propagating metadata to output works now.Peter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-10Validate & propagate metadataPeter Amstutz
2020-04-10Updating schema and examples, including URIslltommy
2020-04-09Add "sequencefile" for the metadata subject.Peter Amstutz
2020-04-09Adding functionality of turning keys into ontology terms (URI). This is work ↵lltommy
in progress - of course!
2020-04-09Updating schema and examples. This is still work in progress but we get therelltommy
2020-04-07Add metadata validation with schema-saladPeter Amstutz
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