index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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path:
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bh20sequploader
/
bh20seq-schema.yml
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Author
2020-04-21
Working on NCBI import
Peter Amstutz
2020-04-21
Updated shex and manditory fields and stuff
lltommy
2020-04-20
Reconsidered these should be noLinkCheck
Peter Amstutz
2020-04-20
Add identity:true to collection_location
Peter Amstutz
2020-04-20
Schema changes from @LLTommy
Peter Amstutz
2020-04-20
Better handling of duplicate sequences
Peter Amstutz
2020-04-20
Making collection date and collection location MANDATORY fields, turning orci...
lltommy
2020-04-20
Fixing string -> URI in speciman, plus other things
lltommy
2020-04-19
small updates to the yaml schema, updating the example files
lltommy
2020-04-19
Updating NCBI dictonaries, adding UI options, small yaml schema changes
lltommy
2020-04-19
Merge pull request #24 from adamnovak/dropdowns
Pjotr Prins
2020-04-18
Extending yaml schema a bit and adding additional information for the UI
lltommy
2020-04-17
Copy NCIT IRIs back to schema doc
Adam Novak
2020-04-15
Typo: submitter_orchid -> submitter_orcid
Stian Soiland-Reyes
2020-04-15
Changing vaccination URI
lltommy
2020-04-14
Updated yaml schema and examples - plus ShEX shape to go along with it. Still...
lltommy
2020-04-13
Starting to turn values into IRIs ...
lltommy
2020-04-11
Adding noLinkCheck to root
lltommy
2020-04-11
Adding descriptions to the yml schema, slight changes to the yml schema
lltommy
2020-04-10
Propagating metadata to output works now.
Peter Amstutz
2020-04-10
Validate & propagate metadata
Peter Amstutz
2020-04-10
Updating schema and examples, including URIs
lltommy
2020-04-09
Add "sequencefile" for the metadata subject.
Peter Amstutz
2020-04-09
Adding functionality of turning keys into ontology terms (URI). This is work ...
lltommy
2020-04-09
Updating schema and examples. This is still work in progress but we get there
lltommy
2020-04-07
Add metadata validation with schema-salad
Peter Amstutz