index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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bh20seqanalyzer
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2020-07-05
Add bh20-seq-analyzer --print-status
Peter Amstutz
2020-07-03
A little more logging
Peter Amstutz
2020-07-03
Add --no-start-analysis
Peter Amstutz
2020-06-22
Adjust QC filter and relabel output sequence with sample_id
Peter Amstutz
2020-06-22
Better invalid sequence QC handling
Peter Amstutz
2020-06-22
Handle upload & assembly of gzipped, paired-end fastq
Peter Amstutz
2020-05-26
Can have list of sequence labels to exclude from combined fasta
Peter Amstutz
2020-05-14
Switch fasta identifiers to use a real working URL
Peter Amstutz
2020-05-04
Sort input to hopefully get container reuse
Peter Amstutz
2020-05-04
Remove debug flag from workflow submit
Peter Amstutz
2020-04-21
Increase ram requirement for minimap2
Peter Amstutz
2020-04-13
Add __init__.py and fix imports
Peter Amstutz
2020-04-10
Propagating metadata to output works now.
Peter Amstutz
2020-04-10
Improve fasta/fastq QC
Peter Amstutz
2020-04-10
Fix swapped fasta/fastq
Peter Amstutz
2020-04-10
Fix up fasta/fastq validation
Peter Amstutz
2020-04-10
Validate & propagate metadata
Peter Amstutz
2020-04-09
Propagate metadata to pangenome so it can be merged by workflow
Peter Amstutz
2020-04-08
Fastq now runs through fastq2fasta pipeline
Peter Amstutz
2020-04-07
Add metadata validation with schema-salad
Peter Amstutz
2020-04-07
limit 1
Peter Amstutz
2020-04-07
Copy recent results to a set destination
Peter Amstutz
2020-04-07
Now moves collections into 'validated sequences' project
Peter Amstutz
2020-04-06
Add service to automatically run a workflow on collections uploaded to a proj...
Peter Amstutz