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path: root/bh20seqanalyzer/main.py
AgeCommit message (Expand)Author
2020-11-10Valid uploads with sequence_label in PubSeq replaces old one.Peter Amstutz
2020-11-09Make it so "pangenome analysis" only runs collect-seqs.Peter Amstutz
2020-08-28added control (locally and in the validation) that sample_id has to be the sa...AndreaGuarracino
2020-08-20Update links to reflect latest workflowPeter Amstutz
2020-08-19Consolidate steps to scale graph generation workflowPeter Amstutz
2020-07-17Make sure move_fastq_to_fasta_results gets everythingPeter Amstutz
2020-07-16Add "validated" and "running workflows" tables to statusanalysis-refactorPeter Amstutz
2020-07-16Catch exceptionsPeter Amstutz
2020-07-16Refactor analysis code into a classPeter Amstutz
2020-07-08Add --revalidate and fix checking/updating properties.Peter Amstutz
2020-07-08Get count from arvadosPeter Amstutz
2020-07-07--print-status=html creates html reportPeter Amstutz
2020-07-05Add bh20-seq-analyzer --print-statusPeter Amstutz
2020-07-03A little more loggingPeter Amstutz
2020-07-03Add --no-start-analysisPeter Amstutz
2020-06-22Adjust QC filter and relabel output sequence with sample_idPeter Amstutz
2020-06-22Better invalid sequence QC handlingPeter Amstutz
2020-06-22Handle upload & assembly of gzipped, paired-end fastqPeter Amstutz
2020-05-26Can have list of sequence labels to exclude from combined fastaPeter Amstutz
2020-05-14Switch fasta identifiers to use a real working URLPeter Amstutz
2020-05-04Sort input to hopefully get container reusePeter Amstutz
2020-05-04Remove debug flag from workflow submitPeter Amstutz
2020-04-21Increase ram requirement for minimap2Peter Amstutz
2020-04-10Propagating metadata to output works now.Peter Amstutz
2020-04-10Improve fasta/fastq QCPeter Amstutz
2020-04-10Fix swapped fasta/fastqPeter Amstutz
2020-04-10Fix up fasta/fastq validationPeter Amstutz
2020-04-10Validate & propagate metadataPeter Amstutz
2020-04-09Propagate metadata to pangenome so it can be merged by workflowPeter Amstutz
2020-04-08Fastq now runs through fastq2fasta pipelinePeter Amstutz
2020-04-07Add metadata validation with schema-saladPeter Amstutz
2020-04-07limit 1Peter Amstutz
2020-04-07Copy recent results to a set destinationPeter Amstutz
2020-04-07Now moves collections into 'validated sequences' projectPeter Amstutz
2020-04-06Add service to automatically run a workflow on collections uploaded to a proj...Peter Amstutz
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