aboutsummaryrefslogtreecommitdiff
path: root/bh20seqanalyzer/main.py
AgeCommit message (Collapse)Author
2020-04-10Fix swapped fasta/fastqPeter Amstutz
Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-10Fix up fasta/fastq validationPeter Amstutz
2020-04-10Validate & propagate metadataPeter Amstutz
2020-04-09Propagate metadata to pangenome so it can be merged by workflowPeter Amstutz
2020-04-08Fastq now runs through fastq2fasta pipelinePeter Amstutz
then gets added to pangenome analysis.
2020-04-07Add metadata validation with schema-saladPeter Amstutz
2020-04-07limit 1Peter Amstutz
2020-04-07Copy recent results to a set destinationPeter Amstutz
2020-04-07Now moves collections into 'validated sequences' projectPeter Amstutz
Improve logging for seq service Fix uploader bug Runs workflow with all validated sequences.
2020-04-06Add service to automatically run a workflow on collections uploaded to a ↵Peter Amstutz
project.