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2020-11-18Give from_sparql more keep cache.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-11-18Fix typo. Give from_sparql more RAM.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-11-18Add query-to-gfa workflow•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-11-16Demo: add commentPjotr Prins
2020-11-16Make demo results clickablePjotr Prins
2020-11-16Fixed JS error on Chromium, see https://stackoverflow.com/questions/13340131/...Pjotr Prins
2020-11-16About pagePjotr Prins
2020-11-16Modify menuPjotr Prins
2020-11-15removed provider_sample_id referencesAndreaGuarracino
2020-11-15fix sequencing_coverageAndreaGuarracino
2020-11-15fixed typos in the integer castAndreaGuarracino
2020-11-15added a check on host_ageAndreaGuarracino
2020-11-14added a check on host_ageAndreaGuarracino
2020-11-14check empty stringsAndreaGuarracino
2020-11-14SPARQL playground: additional exampleslltommy
2020-11-14SPARQLplayground: Adding additional examplelltommy
2020-11-14Adding an additional example to the SPARQL playgroundlltommy
2020-11-13fix check date sra scriptAndreaGuarracino
2020-11-13generation of dates a little more robustAndreaGuarracino
2020-11-13to not create YAML files with date before 2019 DecemberAndreaGuarracino
2020-11-13there can be two specimen termsAndreaGuarracino
2020-11-13Initial commit: SPARQL playground, which replaces the demo page. Some queries...lltommy
2020-11-13Yaml and ShEx changeslltommy
2020-11-13fix in the ids to considerAndreaGuarracino
2020-11-13added ids-to-consider option to the NCBI scriptAndreaGuarracino
2020-11-12added closed shapesAndreaGuarracino
2020-11-12added missing _type: "@id" to the assembly_method field in the schemaAndreaGuarracino
2020-11-12managed the assembly_method in the scripts, doc, and the example templatesAndreaGuarracino
2020-11-12updated alignment_protocol field in the script, doc, and the example templatesAndreaGuarracino
2020-11-12Trying to fix the submitter shape, shex and yamllltommy
2020-11-12Proposed new technology shape/yaml structurelltommy
2020-11-11Support uploading new metadata only•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-11-11Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-11-11Adding GPS coordinates and contitent membership for Memphis and Canadalltommy
2020-11-11Make collect-seqs skip bad inputs.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-11-11Documenting and QC of YAML. Some conflicts discovered that need reviewlltommy
2020-11-11Fix resolving permalinks such as http://covid19.genenetwork.org/resource/MT32...Pjotr Prins
2020-11-11NotesPjotr Prins
2020-11-11Conflict in guix-deployPjotr Prins
2020-11-11DeployPubSeq webserver
2020-11-11DeploymentPjotr Prins
2020-11-11Move files to correct folderlltommy
2020-11-11Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-11-11Adding covid death and covid cases per country as additional background infor...lltommy
2020-11-11create_sra_metadata script doesn't trick the quality control about missing da...AndreaGuarracino
2020-11-11Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-11-11restricting specimen_source to obo:NCIT which would have prevented the ncbi t...lltommy
2020-11-10Valid uploads with sequence_label in PubSeq replaces old one.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-11-10Merge pull request #116 from arvados/uuid-for-resource•••Use arvados uuids for RDF subjects.Peter Amstutz
2020-11-10Use arvados uuids for RDF subjects.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> uuid-for-resourcePeter Amstutz
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