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| author | Peter Amstutz | 2020-11-18 21:24:52 -0500 |
|---|---|---|
| committer | Peter Amstutz | 2020-11-18 21:25:14 -0500 |
| commit | fd4b04479fb85f01d2cb2e582e9e470296b8b3cf (patch) | |
| tree | d82cf13793a87dfb85dc9484ccc7d1272fee66bf | |
| parent | 0b2ac8667451f9dee7121b2d3d37f8f580e75cfb (diff) | |
| download | bh20-seq-resource-fd4b04479fb85f01d2cb2e582e9e470296b8b3cf.tar.gz bh20-seq-resource-fd4b04479fb85f01d2cb2e582e9e470296b8b3cf.tar.lz bh20-seq-resource-fd4b04479fb85f01d2cb2e582e9e470296b8b3cf.zip | |
Give from_sparql more keep cache.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
| -rw-r--r-- | workflows/pangenome-generate/from_sparql.cwl | 7 |
1 files changed, 6 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/from_sparql.cwl b/workflows/pangenome-generate/from_sparql.cwl index ab85656..380b59c 100644 --- a/workflows/pangenome-generate/from_sparql.cwl +++ b/workflows/pangenome-generate/from_sparql.cwl @@ -1,5 +1,7 @@ cwlVersion: v1.1 class: CommandLineTool +$namespaces: + arv: "http://arvados.org/cwl#" requirements: DockerRequirement: dockerFile: | @@ -7,7 +9,10 @@ requirements: RUN apt-get update && apt-get -yq --no-install-recommends install samtools python3-rdflib dockerImageId: rdflib-and-samtools ResourceRequirement: - ramMin: 1024 + ramMin: 768 + arv:RuntimeConstraints: + keep_cache: 2048 + outputDirType: keep_output_dir inputs: script: type: File |