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2020-12-24Merge pull request #117 from arvados/pangenome_workflow_abpoaPjotr Prins
Pangenome workflow with abPOA
2020-12-24Merge pull request #119 from ↵Pjotr Prins
BonfaceKilz/feature/add-commits-and-pubmed-articles-to-feed Feature/add commits and pubmed articles to feed
2020-12-23Add commits and pubmed articles to feedBonfaceKilz
2020-12-23Abstract away for fetching feedcontentBonfaceKilz
* bh20simplewebuploader/main.py: (get_feed_items): New function. (send_home): Use get_feed_items() for fetching feed items.
2020-12-23Order tweets in the feed by highest scoreBonfaceKilz
2020-12-23Add tabbed content for commits, tweets and pubmed contentBonfaceKilz
* bh20simplewebuploader/templates/home.html: Add tab panes for commits, tweets and pubmed content. Use dummy place holder content for commits and tweets. * bh20simplewebuploader/static/main.css: Add basic styling for tabbed content.
2020-12-23Merge duplicate css ruleBonfaceKilz
2020-12-19Merge pull request #118 from BonfaceKilz/Chore/Display-10-tweets-in-feedPjotr Prins
Display only 10 tweets on the feed
2020-12-18Omit appending empty dicts to the list of tweetsBonfaceKilz
This prevents any exception thrown by jinja in the rare event when an empty tweet is stored in Redis
2020-12-07Display only 10 tweets on the feedBonfaceKilz
2020-11-21abPOA works better starting from shorter sequencespangenome_workflow_abpoaAndreaGuarracino
2020-11-21added abPOA workflow; typosAndreaGuarracino
2020-11-21added reversed_sorting parameter; typosAndreaGuarracino
2020-11-21generalized spoa workflowAndreaGuarracino
2020-11-19Adding another example to the SPARQL playgroundlltommy
2020-11-18Give from_sparql more keep cache.Peter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-11-18Fix typo. Give from_sparql more RAM.Peter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-11-18Add query-to-gfa workflowPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-11-16Demo: add commentPjotr Prins
2020-11-16Make demo results clickablePjotr Prins
2020-11-16Fixed JS error on Chromium, see ↵Pjotr Prins
https://stackoverflow.com/questions/13340131/string-prototype-replaceall-not-working
2020-11-16About pagePjotr Prins
2020-11-16Modify menuPjotr Prins
2020-11-15removed provider_sample_id referencesAndreaGuarracino
2020-11-15fix sequencing_coverageAndreaGuarracino
2020-11-15fixed typos in the integer castAndreaGuarracino
2020-11-15added a check on host_ageAndreaGuarracino
2020-11-14added a check on host_ageAndreaGuarracino
2020-11-14check empty stringsAndreaGuarracino
2020-11-14SPARQL playground: additional exampleslltommy
2020-11-14SPARQLplayground: Adding additional examplelltommy
2020-11-14Adding an additional example to the SPARQL playgroundlltommy
2020-11-13fix check date sra scriptAndreaGuarracino
2020-11-13generation of dates a little more robustAndreaGuarracino
2020-11-13to not create YAML files with date before 2019 DecemberAndreaGuarracino
2020-11-13there can be two specimen termsAndreaGuarracino
2020-11-13Initial commit: SPARQL playground, which replaces the demo page. Some ↵lltommy
queries have to be adjusted once changed metadata schema is live
2020-11-13Yaml and ShEx changeslltommy
2020-11-13fix in the ids to considerAndreaGuarracino
2020-11-13added ids-to-consider option to the NCBI scriptAndreaGuarracino
2020-11-12added closed shapesAndreaGuarracino
2020-11-12added missing _type: "@id" to the assembly_method field in the schemaAndreaGuarracino
2020-11-12managed the assembly_method in the scripts, doc, and the example templatesAndreaGuarracino
2020-11-12updated alignment_protocol field in the script, doc, and the example templatesAndreaGuarracino
2020-11-12Trying to fix the submitter shape, shex and yamllltommy
2020-11-12Proposed new technology shape/yaml structurelltommy
2020-11-11Support uploading new metadata onlyPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-11-11Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-11-11Adding GPS coordinates and contitent membership for Memphis and Canadalltommy
2020-11-11Make collect-seqs skip bad inputs.Peter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
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