Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-04-10 | Propagating metadata to output works now. | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-10 | Improve fasta/fastq QC | Peter Amstutz | |
2020-04-10 | Fix swapped fasta/fastq | Peter Amstutz | |
Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-10 | Add qc_fasta | Peter Amstutz | |
2020-04-10 | Fix up fasta/fastq validation | Peter Amstutz | |
2020-04-10 | Validate & propagate metadata | Peter Amstutz | |
2020-04-10 | Magic dependency | Pjotr Prins | |
2020-04-10 | Merge branch 'master' of github.com:arvados/bh20-seq-resource | Pjotr Prins | |
2020-04-10 | Merge pull request #6 from uniqueg/fa_fq_validation | Pjotr Prins | |
validate seq format with magic file | |||
2020-04-10 | Note on running container with Guix | Pjotr Prins | |
2020-04-10 | This fixed | Pjotr Prins | |
{'type': 'string?', 'jsonldPredicate': {'_id': 'http://purl.obolibrary.org/obo/UO_0000036'}} {'type': 'string?', 'jsonldPredicate': 'http://purl.obolibrary.org/obo/NCIT_C25688'} Traceback (most recent call last): (...) File "/export/iwrk/opensource/code/vg/bh20-seq-resource/bh20simplewebuploader/main.py", line 106, in walk_fields for item in walk_fields(field_type, parent_keys + [field_name], subtree_optional or optional): File "/export/iwrk/opensource/code/vg/bh20-seq-resource/bh20simplewebuploader/main.py", line 92, in walk_fields ref_url = field_type.get('jsonldPredicate', {}).get('_id', None) AttributeError: 'str' object has no attribute 'get' | |||
2020-04-10 | Fixed TypeError: 'module' object is not callable | Pjotr Prins | |
2020-04-10 | Cleaned up Guix install instructions | Pjotr Prins | |
2020-04-10 | validate seq format with magic file | Alex Kanitz | |
2020-04-10 | Updating schema and examples, including URIs | lltommy | |
2020-04-10 | Merge pull request #4 from adamnovak/add-web-ui | Pjotr Prins | |
Add Web UI | |||
2020-04-10 | Merge pull request #3 from adamnovak/patch-1 | Pjotr Prins | |
Spell correctly | |||
2020-04-09 | Move the web uploader GUIX instructions to the GUIX file | Adam Novak | |
2020-04-09 | Point to new repo for source | Adam Novak | |
2020-04-09 | Merge remote-tracking branch 'upstream/master' into add-web-ui | Adam Novak | |
2020-04-09 | Copy over/combine top-level project components | Adam Novak | |
2020-04-09 | Merge branch 'move-repo' of ../bh20-simple-web-uploader into HEAD | Adam Novak | |
2020-04-09 | Put back in directory | Adam Novak | |
2020-04-09 | Notes | Pjotr Prins | |
2020-04-09 | Merge branch 'master' of github.com:arvados/bh20-seq-resource | Pjotr Prins | |
2020-04-09 | Moved Guix documentation into separate file (as it confused people ;) | Pjotr Prins | |
2020-04-09 | Propagate metadata to pangenome so it can be merged by workflow | Peter Amstutz | |
2020-04-09 | Spacing and typo | Pjotr Prins | |
2020-04-09 | Merge branch 'master' of github.com:arvados/bh20-seq-resource | Pjotr Prins | |
2020-04-09 | Add "sequencefile" for the metadata subject. | Peter Amstutz | |
2020-04-09 | Make schema link nicer and add example files | Adam Novak | |
2020-04-09 | Don't include pyc | Adam Novak | |
2020-04-09 | Add auto-generated fillable metadata form | Adam Novak | |
2020-04-09 | Adding functionality of turning keys into ontology terms (URI). This is work ↵ | lltommy | |
in progress - of course! | |||
2020-04-09 | Updating schema and examples. This is still work in progress but we get there | lltommy | |
2020-04-09 | update my affiliation & ORCID | Michael R. Crusoe | |
2020-04-08 | Add context links | Adam Novak | |
2020-04-08 | Don't assert that the metadata is really JSON-LD | Adam Novak | |
2020-04-08 | Fastq now runs through fastq2fasta pipeline | Peter Amstutz | |
then gets added to pangenome analysis. | |||
2020-04-08 | Initial commit of working frontend | Adam Novak | |
2020-04-08 | Spell correctly | Adam Novak | |
2020-04-08 | title | Pjotr Prins | |
2020-04-08 | Paper | Pjotr Prins | |
2020-04-07 | Merge pull request #2 from adamnovak/instructions | Peter Amstutz | |
Make README more didactic | |||
2020-04-07 | Add metadata validation with schema-salad | Peter Amstutz | |
2020-04-07 | Make README more didactic | Adam Novak | |
2020-04-07 | limit 1 | Peter Amstutz | |
2020-04-07 | Copy recent results to a set destination | Peter Amstutz | |
2020-04-07 | Note on upload-resume | Pjotr Prins | |
2020-04-07 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |