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2021-01-07Allow for xml and xml.gz filesPjotr Prins
2021-01-06cleaned utils.pyAndreaGuarracino
2021-01-06Pubseq fetch: sometimes a request times out. So repeat with intervals.Pjotr Prins
2021-01-05cleaning update-from-genbank.py; removed unused import from genbank-fetch-ids.pyAndreaGuarracino
2021-01-05cleaning genbank-fetch-ids.pyAndreaGuarracino
2021-01-05Fetching fixesPjotr Prins
2021-01-05Add option for fetching fastaPjotr Prins
2021-01-05fetch: do a straight dump of the original recordPjotr Prins
2021-01-05fetches original metadata from PubSeq/ArvadosPjotr Prins
2021-01-05web: show httpsPjotr Prins
2021-01-05api: more cleanupPjotr Prins
2021-01-05API: fix returned record to include original metadataPjotr Prins
2021-01-05RenamePjotr Prins
2021-01-04mapping: no longer requires specimen file for genbank outputPjotr Prins
2021-01-04Removing refs. No point in guessing termsPjotr Prins
2021-01-04mapping sample_species using regexPjotr Prins
2021-01-04Started on normalizationPjotr Prins
2021-01-03genbank: specimen sourcePjotr Prins
2021-01-03genbank: more or less complete. Need to add collection methodPjotr Prins
2021-01-03genbank: deal with host, sex and agePjotr Prins
2021-01-03genbank: technology parsingPjotr Prins
2021-01-03genbank: submitter infoPjotr Prins
2021-01-03genbank: get authorsPjotr Prins
2021-01-03Move reference code to different file so it does not break pythonPjotr Prins
2021-01-02GenBank date parsingPjotr Prins
2021-01-02transform-genbank-xml2yamlfa.py refactoringPjotr Prins
2021-01-02transform-genbank-xml2yamlfa.py rewritePjotr Prins
2021-01-01genbank: minor fixesPjotr Prins
2021-01-01gzip outputPjotr Prins
2021-01-01update-from-genbank.pyPjotr Prins
2021-01-01genbank-fetch-ids.pyPjotr Prins
2021-01-01genbank-fetch-idsPjotr Prins
2021-01-01genbank: cleaning upPjotr Prins
2021-01-01genbank-fetch-ids simple callPjotr Prins
2021-01-01sparql: make use of pattern matchingPjotr Prins
2020-12-31Add commentPjotr Prins
2020-12-31Improve SPARQL query and commentsPjotr Prins
2020-12-31genbank: sparql-fetch-idsPjotr Prins
2020-12-31sparql: rename filePjotr Prins
2020-12-31genbank: started on SPARQL fetcherPjotr Prins
2020-12-31genbank: pseudo workflowPjotr Prins
2020-12-31genbank: headerPjotr Prins
2020-12-31genbank: split scriptPjotr Prins
2020-12-31genbank: moving script into workflow spacePjotr Prins
2020-12-30IgnoresPjotr Prins
2020-12-30Genbank: commentsPjotr Prins
2020-12-30Merge pull request #120 from BonfaceKilz/feature/add-arxiv-articlesPjotr Prins
Feature/Add Arxiv feed
2020-12-30Add arxiv feedBonfaceKilz
2020-12-24Merge pull request #117 from arvados/pangenome_workflow_abpoaPjotr Prins
Pangenome workflow with abPOA
2020-12-24Merge pull request #119 from ↵Pjotr Prins
BonfaceKilz/feature/add-commits-and-pubmed-articles-to-feed Feature/add commits and pubmed articles to feed
generated by cgit v1.2.3 (git 2.45.0) at 2024-06-29 02:17:27 +0000