index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-11-10
Use arvados uuids for RDF subjects.
uuid-for-resource
Peter Amstutz
2020-11-09
Merge pull request #105 from arvados/fasta-subset-from-query
Peter Amstutz
2020-11-09
Extract PDH from result and construct URIs from that
fasta-subset-from-query
Peter Amstutz
2020-11-09
Make resource link work for both portable data hashes and sample id
Peter Amstutz
2020-11-09
Make it so "pangenome analysis" only runs collect-seqs.
Peter Amstutz
2020-11-09
Rename schema param to metadataSchema
Peter Amstutz
2020-11-09
Extract subset of the all-sequences fasta by running a sparql query.
Peter Amstutz
2020-11-08
Uploaded UTHSC sequences
Pjotr Prins
2020-11-08
UTHSC samples
Pjotr Prins
2020-11-07
Tests: added SPARQL test
Pjotr Prins
2020-11-07
Tests: add runner and frame for SPARQL
Pjotr Prins
2020-11-07
RDF: use URIs
Pjotr Prins
2020-11-07
Test: simplify and add regression test
Pjotr Prins
2020-11-07
Fixed the License error (https!!)
Pjotr Prins
2020-11-07
Running tests without network
Pjotr Prins
2020-11-07
Added failing unit test: No matching triples found for predicate cc:License
Pjotr Prins
2020-11-06
Add location
Pjotr Prins
2020-11-06
Add country entries that miss coordinates
Pjotr Prins
2020-11-06
Country trouble shooting
Pjotr Prins
2020-11-06
Uploader script improvements
Pjotr Prins
2020-11-06
Countries
Pjotr Prins
2020-11-06
Using correct wikidata geo link
Pjotr Prins
2020-11-06
Adding Tennessee items
Pjotr Prins
2020-11-06
UTHSC upload info
Pjotr Prins
2020-11-06
Working on upload
Pjotr Prins
2020-11-05
Add 10 samples
Pjotr Prins
2020-11-05
Added note
Pjotr Prins
2020-11-05
Using 'DOCS' instead of 'BLOG'
Pjotr Prins
2020-11-05
Updated API doc
Pjotr Prins
2020-11-04
virtuoso-ose: install and settings
Pjotr Prins
2020-11-04
fixed sequence_assembly_method field description
AndreaGuarracino
2020-11-04
Test data set
Pjotr Prins
2020-10-30
Adding some more wikidata locations
lltommy
2020-10-28
Country information
Pjotr Prins
2020-10-28
List by country and added to map
Pjotr Prins
2020-10-28
Fix DEMO links
Pjotr Prins
2020-10-28
Adding more metadata to resource uri
Pjotr Prins
2020-10-28
Create permalink and some output
Pjotr Prins
2020-10-28
Use Flask url_for to make relative routes work
Pjotr Prins
2020-10-28
Fix CSS errors
Pjotr Prins
2020-10-27
Commented in uploader main.py
Pjotr Prins
2020-10-27
Updating docs
Pjotr Prins
2020-10-26
Update blog
Pjotr Prins
2020-10-26
Minor CSS for the map
Pjotr Prins
2020-10-26
Improved map to show sequences in one view
Pjotr Prins
2020-10-26
Adding upload metadata examples
Pjotr Prins
2020-10-26
Textual updates
Pjotr Prins
2020-10-06
Create .dockstore.yml
Michael R. Crusoe
2020-10-01
sequence divergence to 5% for minimap2 in the FASTA quality control
AndreaGuarracino
2020-10-01
show more information in the error messages
AndreaGuarracino
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